Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PCN061_RS13550 Genome accession   NZ_CP006636
Coordinates   2703140..2703877 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli PCN061     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2698140..2708877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCN061_RS13535 (PCN061_2676) clpC 2698594..2701167 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  PCN061_RS13540 (PCN061_2677) yfiH 2701297..2702028 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  PCN061_RS13545 (PCN061_2678) rluD 2702025..2703005 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PCN061_RS13550 (PCN061_2679) comL 2703140..2703877 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PCN061_RS13560 (PCN061_2680) raiA 2704148..2704489 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PCN061_RS29755 pheL 2704593..2704637 (+) 45 Protein_2604 pheA operon leader peptide PheL -
  PCN061_RS13565 (PCN061_2681) pheA 2704739..2705899 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  PCN061_RS13570 (PCN061_2682) tyrA 2705942..2707063 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PCN061_RS13575 (PCN061_2683) aroF 2707074..2708144 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PCN061_RS13580 (PCN061_2684) yfiL 2708354..2708719 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=100588 PCN061_RS13550 WP_000197686.1 2703140..2703877(+) (comL) [Escherichia coli PCN061]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=100588 PCN061_RS13550 WP_000197686.1 2703140..2703877(+) (comL) [Escherichia coli PCN061]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment