Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   FGL21_RS04290 Genome accession   NZ_LR594047
Coordinates   813884..817108 (+) Length   1074 a.a.
NCBI ID   WP_138128023.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC11554     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 808884..822108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL21_RS04265 (NCTC11554_00872) - 810106..810483 (+) 378 WP_003057473.1 OsmC family protein -
  FGL21_RS04270 (NCTC11554_00873) - 810476..810862 (+) 387 WP_138128021.1 YbgA family protein -
  FGL21_RS04275 (NCTC11554_00874) - 810935..812011 (+) 1077 WP_003057439.1 ABC transporter permease -
  FGL21_RS04280 (NCTC11554_00875) - 812021..812689 (+) 669 WP_003057498.1 ABC transporter ATP-binding protein -
  FGL21_RS04285 (NCTC11554_00876) - 812783..813709 (-) 927 WP_003057448.1 neutral zinc metallopeptidase -
  FGL21_RS04290 (NCTC11554_00877) rexB 813884..817108 (+) 3225 WP_138128023.1 ATP-dependent nuclease subunit B Machinery gene
  FGL21_RS04295 (NCTC11554_00878) rexA 817108..820737 (+) 3630 WP_172601653.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FGL21_RS04300 (NCTC11554_00879) - 820897..822012 (+) 1116 WP_138128266.1 aminotransferase -

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 123627.63 Da        Isoelectric Point: 5.2453

>NTDB_id=1005873 FGL21_RS04290 WP_138128023.1 813884..817108(+) (rexB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC11554]
MKLIYTEMTYSMTDILVAEARQAASRGYRVFYLAPNSLSFEKEREVLNLLPERGSFSITVTRFAQMARYFTFSNSESKQA
LDETALAMIFYRVLMQLTPEDLPVYGRLKDDPAFIKQLIDLYQELKTANLSVYELTELDTPGKQEDLIRIISLAEELMTQ
QDYHQDSALMSFAKTIETGQLDEQLSKTVLVIDGFSRFSAEEDYLLSLLNNKCQEIVIGSYISQKAYQKPFIKGNIYEAS
IQFLQWLAEQYKTKPIYSQSEKVFAPSFSRVTQLFEASHDFSQVDWQLEEKDKEDIYLWQSHQQKEEIEHVAKAIREKLY
EGYRYKDMLVLLGDVDAYQLQIGPIFDKFEIPYYLGKAEPMTAHPLVQFIESLERSQRYNWRREDILNLLKSGLFGRFAD
SDVDRFEEYLQFADIKGFTKFSRPFTINSSRHYPLELLNEVREAVFSPLQALFKSQKQLGTSLLDKLMTFFKDVQLAENM
KSLGQNELEIEKNEEVWKTFTGVLTSFYQIFGQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQPHSKPFV
YAIGLTQSHFPKQVKETGLLSDQERARINEITDSFQHFDIGSIENSKKNHQTALSLLNAATQELVLSVPAVVNEFSDDLS
PYLKELMSFGLPLIDKGSNRFSYAASDIGNYKALLSRLVDLNREAIVADMTEQDKTFWTVALRYLRRQLRHHQVTLPMLD
DHLVTKPLASEVIEARFPSDRPLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIHPDARIHGQYLHRVFELVMTDHTAAS
FDSKLAQAIHQTNQEKEFQYIYQDSAEDRFSLDLLEDIAKSTASILRLNQNMTVSRQEEPFALHVTDQVVVHGIIDRIDQ
LSDGSLGIVDYKSSANQFDIGKFYNGLSPQLVTYLAALQQQLGPDDLGHLFGAMYLHLQEPKLDLASFKALDDKLVESIY
KELTYKGIFLESEKEYLANGAYQTRNALYSTEELQTLLTYNALLYKKAAEQIKKGHFVINPYTSDGKSVQGEQLKAITRF
EADLDLGQARHLVTLPAKDKRQQFLTLMRKEDNL

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=1005873 FGL21_RS04290 WP_138128023.1 813884..817108(+) (rexB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC11554]
ATGAAACTAATTTATACAGAAATGACCTATTCAATGACAGACATTTTGGTGGCTGAAGCAAGGCAGGCTGCCTCTCGAGG
TTACCGTGTCTTTTACCTTGCTCCAAACTCTCTCTCGTTTGAAAAGGAAAGAGAAGTATTGAACTTGCTACCAGAACGAG
GGTCTTTCTCCATTACCGTGACGCGTTTTGCTCAGATGGCAAGGTATTTTACATTCTCTAACTCTGAGTCAAAACAAGCC
TTAGACGAGACAGCCTTAGCCATGATTTTTTACCGCGTCTTAATGCAGTTAACCCCTGAAGATCTTCCTGTTTATGGTCG
CTTGAAAGACGATCCGGCTTTTATTAAGCAGCTAATTGATCTCTATCAAGAATTAAAAACGGCTAACCTTAGTGTCTATG
AGTTAACCGAGTTAGATACTCCCGGTAAACAAGAAGACCTAATAAGGATTATCTCCCTTGCCGAAGAACTCATGACTCAG
CAAGATTACCATCAAGACAGTGCGTTGATGTCCTTTGCTAAAACCATTGAAACAGGTCAATTGGACGAACAACTATCAAA
AACAGTACTAGTTATTGATGGGTTTTCTCGTTTTTCTGCTGAAGAAGATTACCTATTATCTCTTCTTAACAACAAGTGTC
AAGAGATTGTGATAGGAAGTTATATTAGTCAGAAAGCCTACCAAAAACCGTTTATTAAAGGAAATATTTATGAGGCCAGT
ATCCAATTTTTGCAATGGCTTGCTGAACAGTACAAGACAAAACCGATTTATTCTCAATCGGAAAAGGTTTTCGCGCCGTC
TTTTTCAAGAGTGACTCAGTTATTTGAAGCTAGCCATGATTTTTCTCAAGTAGATTGGCAATTGGAAGAAAAAGATAAAG
AAGACATTTACCTCTGGCAAAGTCATCAGCAAAAAGAAGAGATAGAGCATGTTGCTAAGGCTATTCGAGAAAAATTGTAT
GAAGGTTATCGCTATAAGGACATGTTGGTCTTGCTAGGAGATGTGGACGCCTACCAGTTGCAAATTGGTCCCATTTTTGA
CAAATTTGAGATTCCTTACTATTTAGGGAAGGCAGAACCCATGACCGCTCATCCCTTAGTGCAATTTATAGAATCTTTAG
AGCGGAGCCAGCGCTATAATTGGCGTCGTGAAGATATTTTAAACCTGCTCAAATCAGGACTTTTTGGAAGGTTTGCCGAT
AGTGACGTTGACCGCTTTGAAGAATACCTCCAATTTGCAGACATTAAAGGATTCACTAAATTTTCAAGGCCTTTTACGAT
TAATTCCTCTCGTCATTACCCATTAGAGTTGTTAAACGAGGTAAGAGAAGCTGTTTTTTCTCCGTTGCAAGCCTTATTTA
AGAGTCAAAAACAATTGGGAACGTCATTGCTAGATAAATTGATGACCTTTTTTAAAGACGTTCAGTTAGCAGAAAATATG
AAAAGCCTGGGCCAAAATGAACTAGAAATCGAGAAAAATGAGGAAGTTTGGAAAACATTTACCGGCGTGTTAACCTCTTT
TTACCAGATTTTTGGTCAGGAAAAATTGAAACTGGCGGACTGTCTTTCCTTAATCAAAATGGGAATGCAGTCAGCCCACT
ATCGTATTGTTCCAGCTACTTTAGATGTTGTTTCTATCAAATCCTATGATTTGGTGCAACCTCACTCAAAACCTTTTGTT
TATGCTATTGGTCTTACGCAATCCCATTTTCCAAAGCAAGTCAAAGAGACAGGGCTACTTTCTGATCAAGAACGGGCAAG
AATTAACGAAATCACTGATAGCTTCCAGCATTTTGACATTGGCAGTATCGAAAATAGCAAGAAAAATCATCAGACAGCTC
TTTCGCTTTTGAATGCAGCCACTCAAGAATTGGTCCTGAGTGTCCCAGCAGTAGTGAACGAATTTTCAGATGACTTGTCT
CCTTACCTCAAGGAATTGATGTCCTTTGGTCTTCCACTGATTGATAAAGGAAGCAATCGCTTTTCTTATGCTGCTAGTGA
TATTGGCAACTATAAGGCCCTTTTGTCACGTTTAGTTGACCTTAATCGAGAAGCTATAGTAGCTGACATGACCGAACAGG
ACAAGACTTTTTGGACGGTTGCCCTTCGCTATCTCCGACGACAATTAAGACATCATCAAGTCACACTTCCTATGCTAGAT
GACCATTTGGTGACGAAACCTCTAGCCTCCGAAGTTATTGAGGCACGTTTTCCAAGCGATAGACCGCTTAGACTATCATC
GACTGCTCTGACTGTTTTTTATAATAACCAGTACAAGTATTTTTTGCAGTATGTCCTAGGGCTACAAGAAGCCGAATCCA
TTCATCCTGATGCCCGCATTCATGGGCAATATTTACATCGGGTATTTGAATTGGTGATGACGGATCACACAGCAGCTTCC
TTTGACAGCAAATTGGCGCAAGCCATTCATCAAACTAACCAAGAAAAAGAGTTTCAATACATCTATCAAGACAGTGCTGA
AGATCGTTTCAGTTTAGACTTGCTTGAAGATATTGCTAAGTCAACCGCTTCTATTTTGCGTCTTAATCAGAATATGACTG
TCAGTCGACAAGAAGAACCTTTTGCCCTTCACGTGACAGATCAGGTAGTAGTCCATGGGATAATTGACCGGATTGACCAG
TTAAGTGATGGGAGTCTAGGGATTGTTGATTATAAATCCAGTGCGAATCAGTTTGATATCGGGAAATTTTACAATGGGTT
AAGCCCACAACTTGTTACTTATCTGGCTGCTTTGCAGCAACAACTTGGACCAGATGATTTAGGGCACTTATTTGGTGCCA
TGTACTTGCATTTGCAAGAGCCTAAGTTGGACTTAGCATCTTTCAAAGCACTTGATGATAAACTAGTTGAAAGTATTTAT
AAAGAATTGACCTATAAAGGAATCTTTTTAGAGTCTGAAAAAGAATATTTAGCAAATGGTGCTTACCAGACGCGAAATGC
ACTTTATTCCACTGAAGAGTTACAAACCCTCTTGACTTATAATGCTCTTCTTTACAAGAAAGCAGCAGAGCAGATTAAGA
AAGGGCATTTTGTCATTAACCCTTATACAAGTGATGGGAAGTCTGTTCAAGGAGAACAACTCAAGGCTATTACACGTTTT
GAGGCTGATCTTGATTTGGGCCAAGCAAGGCATCTTGTAACGCTCCCTGCCAAAGATAAGCGCCAGCAGTTTTTAACGTT
AATGAGAAAGGAGGATAACCTGTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(744-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

42.897

100

0.43

Multiple sequence alignment