Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   FGL18_RS04005 Genome accession   NZ_LR594046
Coordinates   793990..797619 (+) Length   1209 a.a.
NCBI ID   WP_280641380.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain NCTC6403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 788990..802619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL18_RS03995 (NCTC6403_00821) - 789665..790591 (-) 927 WP_022554458.1 neutral zinc metallopeptidase -
  FGL18_RS04000 (NCTC6403_00822) rexB 790766..793990 (+) 3225 WP_138125287.1 ATP-dependent nuclease subunit B Machinery gene
  FGL18_RS04005 (NCTC6403_00823) rexA 793990..797619 (+) 3630 WP_280641380.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FGL18_RS04010 (NCTC6403_00824) - 797779..798894 (+) 1116 WP_138125291.1 aminotransferase -
  FGL18_RS04015 (NCTC6403_00825) - 798963..799775 (+) 813 WP_138125293.1 transporter substrate-binding domain-containing protein -
  FGL18_RS04020 (NCTC6403_00826) rpsU 799865..800041 (+) 177 WP_000048058.1 30S ribosomal protein S21 -
  FGL18_RS04025 (NCTC6403_00827) mscL 800173..800547 (-) 375 WP_111716047.1 large conductance mechanosensitive channel protein MscL -
  FGL18_RS04030 (NCTC6403_00828) dnaG 800675..802489 (+) 1815 WP_138126968.1 DNA primase -

Sequence

Protein


Download         Length: 1209 a.a.        Molecular weight: 138307.72 Da        Isoelectric Point: 5.2582

>NTDB_id=1005769 FGL18_RS04005 WP_280641380.1 793990..797619(+) (rexA) [Streptococcus dysgalactiae strain NCTC6403]
MSFDPFLSPSAIAQLQEKEAQSSQAQKRTPEQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSVDRLFISTFT
VKAATELRERIEKKLYAEIAKTSDPLLKAYLTDQLQALSQADIGTMDAFAQKVLIRYGYSIGISPQFRIMQDKAEQDILK
RDVFSKLFEEFMTQDDPSLFKALVKNFSGNRKDASSFREVVYSCYAFSQSTENPKQWLEETFLKAAQTYQGLEDVPEQEI
QLLLSTMQDTADQLRDVTDMEDYGQLTKAGKPTAKYVKHLAMIEKLYEWARDFPHLYGRQGISRLAKDLTALLPTGNDAT
VAGIKYPVFKSLHQKLIRFRHLETILSYQPESLPLLELLKIVVLAFSKAYLDAKKQEGAFEFSDIAHFAIQILEENPDIR
QTYQDQYHEVMVDEYQDNNHMQERLLTLLSNGHNRFMVGDIKQSIYRFRQADPQIFNQKFKDYQTYPEQGKLILLKENFR
SQSEVLEASNTVFTHLMDESLGDILYDEQHQLVAGSVGQKIASPEHRAKLLLYNTDHEDQLDIEDADGISPSEVTIVAKE
IIRLHNEQHVPFEDITLLVSSRTRNDAIFHTFNQYGIPLVADGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSP
MFAFDEDELTRLALQQGDDKEADCLYDKLERACLGTGTHPDLVHQDLKLKLSRFIETLKSWRRYAKIRSLYDLIWKIFND
RFYFDFVGSQAKAEQAQANLYALALRANQFEQSGYKGLSRFIGMIDKVLETQNDLADVEVASPKQAVNLMTIHKSKGLEF
KYVFLLNCDKRFAMTDVHAPFILSRQQGIGIKYLADVKDVLEEKTLPSVKVSMETLPYQLNKQELRLATLSEQMRLLYVA
MTRAEKQIYLIGKASKEKSQEFTDGKRSGNHLPLALRERLMSFQDWLLAIADTFTAEDLHFDVQFIEESELSPEAIGHLQ
SQQVLQPDDLKDNRQSADITRAIDMLDKVSQLNERYEAAIHLPTVRTPSQLKAAYEPLLDSDGVEVMEKSYRTLNEFTLP
EFSKQVKVEASQIGSALHRLMQAIPLTKPISLATIAQALEEIEAETVVKAALDLQKVEQFFTETALGKRFQTYSTNLYRE
APFAILKKDPLSQEDYVIRGIIDAFLLFEDHIELIDYKTDRYRHPSDLKTRYQQQLELYAEALSQTYGLPVTKKYLVLMG
GPELAIVTL

Nucleotide


Download         Length: 3630 bp        

>NTDB_id=1005769 FGL18_RS04005 WP_280641380.1 793990..797619(+) (rexA) [Streptococcus dysgalactiae strain NCTC6403]
ATATCATTTGACCCTTTTTTAAGTCCAAGTGCCATTGCGCAACTACAAGAAAAAGAAGCTCAAAGTAGTCAAGCGCAAAA
AAGAACCCCAGAACAAATCGAAGCTATTTATACCAGTGGGCAAAATATCTTGGTGTCAGCCTCAGCTGGATCTGGAAAAA
CCTTTGTTATGGTGGAACGGATTCTTGATAAAATCCTAAGGGGTGTTTCAGTAGATAGACTTTTTATTTCAACCTTTACG
GTCAAAGCCGCTACCGAGTTACGTGAACGTATTGAAAAAAAACTGTATGCGGAAATTGCGAAAACCAGTGATCCTTTGCT
AAAAGCTTATCTAACAGACCAATTACAAGCTTTGTCACAGGCTGATATTGGGACGATGGATGCTTTTGCTCAAAAAGTCC
TCATCCGTTACGGGTACAGCATTGGTATTTCCCCACAATTTCGTATTATGCAAGATAAGGCGGAGCAAGACATTCTAAAG
CGAGATGTTTTTAGCAAATTATTTGAAGAATTTATGACTCAAGATGATCCGTCCTTGTTCAAGGCATTGGTCAAAAATTT
TTCCGGTAATCGTAAAGATGCTTCTTCGTTTAGAGAAGTCGTCTATAGTTGCTACGCCTTTAGCCAATCTACTGAAAATC
CGAAACAGTGGTTAGAAGAAACCTTTCTAAAAGCTGCTCAAACCTATCAAGGGCTTGAAGATGTCCCTGAACAAGAGATT
CAACTCTTACTGTCGACCATGCAAGATACCGCAGATCAGTTAAGAGATGTGACTGACATGGAAGATTATGGTCAGCTGAC
AAAAGCTGGAAAACCAACAGCAAAATACGTCAAACATTTGGCCATGATAGAGAAGCTTTACGAATGGGCGCGTGACTTTC
CTCACCTCTATGGGAGACAGGGGATAAGCCGCCTAGCAAAGGACCTAACAGCCCTTTTGCCGACTGGAAATGATGCGACA
GTGGCTGGGATAAAATACCCTGTCTTCAAGAGTTTACACCAAAAGCTCATCCGATTTAGGCACTTAGAAACCATTTTAAG
CTATCAGCCAGAAAGCCTTCCCTTATTAGAACTTTTGAAGATTGTTGTGCTTGCTTTTTCGAAGGCTTATTTGGATGCCA
AAAAACAAGAAGGTGCTTTTGAATTTTCAGATATTGCCCATTTTGCCATACAGATTTTAGAAGAAAACCCTGATATTAGG
CAGACATATCAAGACCAGTATCATGAAGTCATGGTTGATGAGTATCAAGATAATAATCATATGCAAGAGCGGCTGTTGAC
CTTATTATCAAATGGACATAACCGTTTTATGGTGGGTGATATTAAACAATCCATTTACCGTTTTCGACAGGCAGATCCTC
AGATCTTCAATCAAAAATTCAAGGACTATCAAACCTATCCTGAGCAAGGAAAACTCATTTTATTGAAAGAGAATTTCCGG
AGTCAATCAGAAGTTTTAGAAGCTAGCAATACTGTCTTTACTCATTTAATGGATGAATCCCTAGGAGATATTTTGTATGA
TGAGCAGCATCAGTTGGTGGCAGGTAGCGTTGGTCAAAAAATTGCTTCCCCAGAGCATCGTGCTAAGCTCCTGCTTTATA
ACACCGATCACGAAGATCAACTTGACATAGAAGATGCAGATGGCATTTCGCCTAGTGAAGTGACCATCGTTGCCAAAGAA
ATCATTAGGTTACACAATGAGCAACACGTACCTTTTGAGGATATAACCCTCTTAGTATCATCCAGAACAAGAAATGATGC
CATTTTTCATACCTTTAACCAATACGGTATTCCGCTTGTGGCAGATGGTGGTCAGCAAAATTACCTTAAGTCAGTTGAAG
TAATGGTGATGTTGGATACCTTACGTACTATTAATAACCCAAGAAATGATTATGCCTTGGTCGCTCTATTGCGTTCACCG
ATGTTTGCTTTTGATGAAGATGAACTGACTAGGCTAGCCCTCCAACAAGGAGACGACAAAGAAGCAGATTGCCTCTATGA
TAAATTGGAGAGAGCATGCCTTGGCACAGGAACACACCCTGATTTGGTCCATCAAGACCTAAAACTAAAACTAAGCAGGT
TTATAGAGACCTTAAAAAGCTGGCGCCGTTACGCTAAAATCAGGTCGCTCTATGATCTCATTTGGAAAATTTTCAATGAC
CGTTTCTATTTTGACTTTGTGGGTAGTCAAGCTAAAGCAGAACAGGCACAAGCTAATTTATATGCCTTGGCTCTTCGAGC
TAATCAGTTTGAACAATCAGGTTACAAAGGTCTCTCGCGTTTTATTGGCATGATTGACAAGGTGCTGGAAACACAAAATG
ATTTAGCCGATGTTGAGGTAGCTAGCCCTAAACAAGCCGTTAATCTGATGACCATTCACAAGTCCAAGGGATTGGAATTC
AAGTATGTCTTTCTCCTCAACTGTGATAAACGTTTTGCCATGACAGATGTCCATGCACCATTTATTTTAAGCCGTCAACA
GGGCATCGGTATTAAGTATCTAGCAGATGTCAAAGACGTTCTGGAAGAAAAAACGTTACCTTCAGTTAAAGTGAGTATGG
AAACTCTCCCCTATCAACTCAATAAACAAGAGCTGCGTTTGGCGACTCTATCTGAGCAAATGCGCTTACTCTATGTTGCT
ATGACACGGGCTGAAAAGCAAATCTATCTGATAGGCAAGGCAAGCAAGGAGAAAAGTCAAGAATTCACCGATGGCAAACG
CTCGGGAAATCATCTGCCTTTAGCTCTGCGTGAGCGATTAATGTCCTTCCAAGATTGGCTTTTAGCGATAGCAGATACCT
TCACCGCAGAAGATCTCCATTTTGATGTTCAGTTTATTGAAGAAAGTGAATTGAGTCCAGAAGCTATTGGTCATCTACAG
AGTCAACAGGTCTTACAACCGGATGACCTCAAAGACAATCGTCAGTCAGCAGATATTACGAGAGCCATTGACATGCTTGA
CAAAGTATCTCAACTTAATGAACGCTATGAAGCTGCCATTCACCTACCAACAGTCCGAACGCCAAGCCAACTAAAAGCTG
CTTATGAGCCCCTGTTGGATTCAGATGGCGTCGAGGTTATGGAAAAAAGTTATCGGACACTCAACGAATTTACCTTACCT
GAGTTTTCAAAGCAAGTTAAAGTTGAAGCTAGTCAGATAGGGTCAGCCCTTCATCGCCTCATGCAAGCCATCCCTTTAAC
GAAGCCAATCAGTTTGGCAACAATTGCGCAAGCGTTGGAAGAAATAGAAGCTGAAACAGTGGTCAAAGCAGCCCTTGATT
TACAAAAGGTAGAACAGTTCTTTACTGAAACGGCTTTAGGAAAAAGGTTTCAAACCTACTCGACTAATCTTTACCGAGAA
GCGCCATTTGCCATCCTCAAGAAAGACCCTCTCAGCCAAGAAGATTATGTCATTCGTGGGATTATAGATGCCTTTCTCTT
GTTTGAAGATCATATCGAATTGATAGACTACAAAACAGATAGGTATCGTCATCCGAGTGACTTAAAAACACGCTATCAAC
AACAACTGGAATTATATGCAGAAGCGCTTAGCCAGACCTATGGACTTCCTGTAACCAAAAAGTACTTAGTACTGATGGGC
GGACCAGAATTGGCTATTGTGACGCTTTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1039-1188)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-464)

UvrD-like helicase C-terminal domain (UvrD_C)

(473-891)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.557

71.712

0.37

Multiple sequence alignment