Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QUD44_RS01285 Genome accession   NZ_AP027275
Coordinates   251504..252655 (+) Length   383 a.a.
NCBI ID   WP_019291389.1    Uniprot ID   A0A252CD28
Organism   Lactococcus formosensis strain MS200408A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 246504..257655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD44_RS01265 (LFMS200408A_02440) - 247208..248494 (-) 1287 WP_096368744.1 PTS transporter subunit EIIC -
  QUD44_RS01270 (LFMS200408A_02450) - 248517..249314 (-) 798 WP_096368743.1 tyrosine-protein phosphatase -
  QUD44_RS01275 (LFMS200408A_02460) - 249648..250391 (+) 744 WP_096368742.1 SIS domain-containing protein -
  QUD44_RS01280 (LFMS200408A_02470) mutM 250579..251403 (+) 825 WP_096368741.1 DNA-formamidopyrimidine glycosylase -
  QUD44_RS01285 (LFMS200408A_02480) recA 251504..252655 (+) 1152 WP_019291389.1 recombinase RecA Machinery gene
  QUD44_RS01290 (LFMS200408A_02490) - 252691..254055 (-) 1365 WP_096368740.1 amino acid permease -
  QUD44_RS01295 (LFMS200408A_02500) - 254260..254634 (+) 375 WP_017369481.1 YlbF family regulator -
  QUD44_RS01300 (LFMS200408A_02510) - 254618..254974 (+) 357 WP_096368739.1 YlbG family protein -
  QUD44_RS01305 (LFMS200408A_02520) - 255033..255551 (-) 519 WP_096368738.1 dithiol-disulfide isomerase -
  QUD44_RS01310 (LFMS200408A_02530) - 255680..256276 (-) 597 WP_017369478.1 CYTH domain-containing protein -
  QUD44_RS01315 (LFMS200408A_02540) - 256593..257273 (+) 681 WP_017369477.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40967.88 Da        Isoelectric Point: 5.0750

>NTDB_id=100567 QUD44_RS01285 WP_019291389.1 251504..252655(+) (recA) [Lactococcus formosensis strain MS200408A]
MATKKKKKLEDITKKYGAEREKALKDALDLIEKDFGKGSLMRLGEAASQKVQVTSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQVQAEGGIAAFIDAEHALDPVYAAAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSV
AALTPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTAIGKLTKIKVVKNKVAPPFKVALVDIMFGEGISKTGELLTIAVEEGIVKKAGAWFSYNDEKIGQGA
EKAKAFLKDNPEIFNEIDRKVRQNHGLIESDEENEKEDAKPAKADEKVKVEAAGVEEIELELE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=100567 QUD44_RS01285 WP_019291389.1 251504..252655(+) (recA) [Lactococcus formosensis strain MS200408A]
ATGGCTACAAAGAAAAAGAAAAAATTAGAAGATATCACAAAAAAATATGGTGCAGAACGTGAAAAAGCATTAAAAGATGC
ACTTGACCTCATCGAAAAAGATTTTGGTAAAGGTTCTTTGATGCGTTTAGGGGAAGCTGCGAGTCAAAAAGTTCAAGTGA
CAAGTTCAGGTAGTTTGGCCTTGGATATTGCGCTTGGTGCAGGAGGTTACCCTAAAGGTCGTATCATCGAGATTTATGGT
CCGGAAAGTTCTGGTAAGACAACAGTTGCGCTGCATGCGGTTGCTCAAGTGCAAGCCGAAGGTGGTATTGCTGCCTTTAT
CGATGCAGAGCATGCTTTGGACCCCGTCTATGCAGCAGCGATCGGCGTAGATATTGACCAGCTTCTTTTGTCACAACCAG
ACTATGGTGAGCAAGGCTTGCAAATTGCTGAGAAATTGATTGAATCTGGTGCAGTGGACCTTGTTGTTGTCGACTCTGTT
GCTGCTTTGACACCACGTGCCGAAATTGACGGTGAAATCGGAGATTCGACAGTTGGTTTGCAAGCACGTATGATGAGTCA
AGCCATGCGTAAGCTTGCTGCAGGCATCAACAAAACAAAAACAACAGCGATCTTTATCAACCAATTGCGCGAAAAAGTCG
GTGTTATGTTTGGTAGCCCAGAAACAACGCCTGGTGGTCGTGCTTTGAAATTCTATGCTTCTGTACGTTTAGACGTTCGT
GGTAGCACAAAAATCGAAGAAGGCTCTGGTGACAACAAAACAGCCATTGGTAAGTTGACGAAGATTAAAGTTGTTAAAAA
CAAAGTTGCGCCACCATTTAAAGTTGCTTTAGTAGATATCATGTTTGGTGAAGGTATTTCTAAAACAGGTGAACTCTTAA
CAATTGCCGTTGAAGAAGGCATTGTGAAGAAAGCAGGTGCTTGGTTCTCTTATAATGACGAAAAAATTGGTCAGGGTGCG
GAGAAAGCAAAAGCTTTCCTTAAAGATAATCCTGAAATTTTCAATGAAATCGACCGTAAAGTACGTCAAAATCACGGTTT
GATTGAAAGTGATGAAGAAAATGAAAAAGAAGATGCTAAACCAGCAAAAGCAGATGAAAAAGTAAAGGTTGAAGCTGCTG
GAGTAGAAGAAATCGAGCTTGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A252CD28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

86.364

91.906

0.794
  recA Streptococcus pneumoniae Rx1

76.289

100

0.773
  recA Streptococcus pneumoniae D39

76.289

100

0.773
  recA Streptococcus pneumoniae R6

76.289

100

0.773
  recA Streptococcus pneumoniae TIGR4

76.289

100

0.773
  recA Streptococcus mitis NCTC 12261

76.823

100

0.77
  recA Streptococcus mitis SK321

76.562

100

0.768
  recA Streptococcus mutans UA159

77.26

95.3

0.736
  recA Streptococcus pyogenes NZ131

80.523

89.817

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

63.352

91.906

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

86.162

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

87.99

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.303

86.162

0.52
  recA Acinetobacter baumannii D1279779

57.558

89.817

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.143

89.556

0.512
  recA Glaesserella parasuis strain SC1401

57.31

89.295

0.512
  recA Helicobacter pylori strain NCTC11637

58.036

87.728

0.509
  recA Helicobacter pylori 26695

58.036

87.728

0.509
  recA Vibrio cholerae strain A1552

60.185

84.595

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

84.595

0.509
  recA Acinetobacter baylyi ADP1

60.185

84.595

0.509
  recA Neisseria gonorrhoeae strain FA1090

57.015

87.467

0.499
  recA Neisseria gonorrhoeae MS11

57.015

87.467

0.499
  recA Neisseria gonorrhoeae MS11

57.015

87.467

0.499
  recA Ralstonia pseudosolanacearum GMI1000

58.991

82.768

0.488
  recA Pseudomonas stutzeri DSM 10701

56.173

84.595

0.475

Multiple sequence alignment