Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FGL05_RS05580 Genome accession   NZ_LR594044
Coordinates   1137975..1140173 (-) Length   732 a.a.
NCBI ID   WP_111712711.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC8796     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132975..1145173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL05_RS05555 (NCTC8796_01184) nth 1133752..1134402 (-) 651 WP_020916515.1 endonuclease III -
  FGL05_RS05560 (NCTC8796_01185) - 1134402..1135076 (-) 675 WP_111712712.1 DnaD domain-containing protein -
  FGL05_RS05565 (NCTC8796_01186) metA 1135155..1136099 (-) 945 WP_058833141.1 homoserine O-succinyltransferase -
  FGL05_RS05570 (NCTC8796_01187) - 1136207..1136725 (-) 519 WP_004231134.1 adenine phosphoribosyltransferase -
  FGL05_RS05575 (NCTC8796_01188) bsh 1136828..1137805 (-) 978 WP_058833142.1 choloylglycine hydrolase -
  FGL05_RS05580 (NCTC8796_01189) recJ 1137975..1140173 (-) 2199 WP_111712711.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FGL05_RS05585 (NCTC8796_01190) - 1140209..1140967 (-) 759 WP_111712710.1 SDR family oxidoreductase -
  FGL05_RS05590 (NCTC8796_01191) rnz 1140964..1141893 (-) 930 WP_111712709.1 ribonuclease Z -
  FGL05_RS05595 (NCTC8796_01192) - 1141934..1142572 (-) 639 WP_020916508.1 cystathionine gamma-lyase -
  FGL05_RS05600 (NCTC8796_01193) hflX 1142565..1143803 (-) 1239 WP_020916507.1 GTPase HflX -
  FGL05_RS05605 (NCTC8796_01194) miaA 1143893..1144792 (-) 900 WP_111712708.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  FGL05_RS05610 (NCTC8796_01195) - 1144980..1145156 (+) 177 WP_020916505.1 DUF3042 family protein -

Sequence

Protein


Download         Length: 732 a.a.        Molecular weight: 81945.77 Da        Isoelectric Point: 4.4661

>NTDB_id=1005569 FGL05_RS05580 WP_111712711.1 1137975..1140173(-) (recJ) [Streptococcus lutetiensis strain NCTC8796]
MITSKYNWKNIKKEPDDGFFEVTKKENITALASKILYSRGVDNDEKLAQFLSNDLSQLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIMKEALEMLGAEVQVYLPNRFVDGYGPNESVYKYFIEQQQVSLIITVDNGVAGHEAISYAQ
SQGVDVIVTDHHGLPAELPDAFAIVHPEYPEANYPFRYLAGCGVAFKVACALLESIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEMLKQTERIGLMELMKVSDIDMSDVNEETVGFKIAPQLNALGRLDDPNRAIELLTGFDDEEALSIAQMINAKN
EERKEIVQKIYDEAMGMVDLDKPVQVLAKEGWHPGVLGIVAGRILEHIAQPVIVLNIEDGMAKGSARSIEAINIFHALDD
HRDLFEAFGGHAGAAGMTLPVDNLEQLSQVLCDYIAENDINLAQKKTLIIDEVLDLSEIDLDTVKSLEKIAPFGMDNAKP
VFEIKDLTVKQARTMGQNGTHLKLKIAQGSTAVDLVAFNQGHLVQEFQQAQNLCLAVTLSINKWNGQTTVQLMLEDARVD
GVQLIDIRSKNASLPERVPVLSEDTSAGEVVVLDIPDKAEELKSLFVGRQFDAVYFKNHIKRAYYLTGYGTREQFAKLYK
TIYQFPEFDVRYKLKELSHYLNIPDILLVKMIQIFDELDFVTITDGVMVVNKGAEKRSISDSKIYQNLKQEVKFQELMAL
GTPQEIYDWLMN

Nucleotide


Download         Length: 2199 bp        

>NTDB_id=1005569 FGL05_RS05580 WP_111712711.1 1137975..1140173(-) (recJ) [Streptococcus lutetiensis strain NCTC8796]
ATGATAACAAGTAAATACAATTGGAAAAATATTAAAAAAGAGCCAGATGATGGCTTTTTTGAAGTGACAAAAAAAGAAAA
TATAACGGCATTAGCCAGCAAAATCCTATACAGTCGTGGCGTTGACAACGACGAAAAACTAGCTCAATTTTTATCGAATG
ATTTGTCACAACTTCACGATCCATATCTTTTGCACGATATGGACAAGGCAGTTGCCCGCATTCGTCAAGCTATTGAAAAT
TATGAACAAATCTTGGTTTATGGTGACTATGATGCCGACGGGATGACCAGCGCTAGTATCATGAAAGAAGCGTTGGAAAT
GCTTGGGGCTGAGGTTCAAGTCTATCTTCCTAACCGATTTGTTGATGGTTATGGACCAAATGAATCGGTTTATAAGTATT
TCATCGAGCAACAACAGGTTTCTTTGATTATTACGGTGGATAATGGCGTAGCTGGACATGAAGCTATTAGCTATGCACAA
AGTCAAGGAGTAGATGTCATTGTTACTGACCACCATGGCTTACCAGCAGAGCTTCCAGACGCATTTGCCATTGTACATCC
AGAGTATCCAGAAGCTAACTATCCTTTTAGATATTTAGCAGGATGTGGTGTTGCCTTCAAAGTGGCTTGTGCCCTATTAG
AATCCATCCCAACCGAAATGTTAGACTTGGTTGCTATCGGAACGATTGCCGATATGGTTAGTCTAACAGATGAAAATCGT
ATCATGGTAAAGGTTGGGCTTGAAATGCTCAAGCAGACCGAACGCATTGGTCTCATGGAGCTTATGAAAGTATCTGATAT
TGACATGTCAGATGTTAATGAGGAAACTGTTGGGTTTAAAATTGCACCGCAGCTAAATGCTCTTGGTCGTCTAGATGATC
CAAATCGAGCTATTGAATTATTGACTGGTTTTGATGATGAAGAAGCGCTAAGTATTGCGCAAATGATTAATGCCAAGAAT
GAAGAACGTAAAGAAATTGTTCAAAAAATTTACGATGAAGCCATGGGCATGGTTGATCTTGACAAGCCTGTGCAGGTGTT
GGCAAAAGAAGGCTGGCATCCAGGTGTTCTAGGAATTGTCGCTGGTCGTATTTTGGAGCACATTGCTCAGCCAGTTATTG
TCTTAAACATTGAAGACGGTATGGCAAAAGGCTCTGCTAGAAGTATTGAGGCAATCAATATCTTCCATGCACTTGATGAC
CACCGTGATTTATTTGAAGCTTTTGGTGGACATGCTGGTGCTGCAGGAATGACCTTGCCAGTTGATAACTTAGAGCAATT
GTCACAAGTTTTATGTGATTACATTGCTGAAAATGATATTAATTTAGCTCAGAAAAAGACTTTGATCATTGATGAAGTGC
TGGACTTGTCAGAAATTGATTTGGACACTGTTAAAAGTCTTGAGAAGATCGCACCTTTTGGGATGGATAATGCTAAGCCA
GTCTTTGAAATCAAAGACCTTACCGTTAAACAAGCACGTACCATGGGGCAAAATGGCACTCACTTGAAATTAAAAATTGC
TCAAGGAAGTACGGCGGTTGACCTTGTTGCCTTTAACCAAGGTCATTTGGTACAAGAATTCCAGCAAGCGCAGAACCTGT
GCCTTGCCGTTACTTTGTCAATCAACAAATGGAACGGGCAAACCACAGTTCAGTTGATGCTTGAAGACGCGCGTGTTGAC
GGCGTTCAGTTGATTGATATTCGTTCCAAAAATGCCAGTCTTCCTGAACGTGTTCCTGTTTTGAGTGAAGACACCAGTGC
CGGTGAAGTGGTTGTACTAGATATTCCTGATAAGGCTGAAGAACTCAAATCCCTTTTTGTCGGTCGACAATTTGATGCCG
TTTACTTTAAAAATCACATCAAACGAGCTTATTATTTGACTGGCTATGGAACTCGCGAACAATTTGCTAAGTTGTATAAA
ACGATTTATCAATTCCCTGAATTTGATGTTCGTTACAAGCTGAAAGAATTGAGTCATTATCTTAATATTCCTGATATTCT
TTTGGTCAAAATGATTCAAATTTTTGATGAATTGGATTTTGTAACCATCACAGATGGAGTGATGGTCGTCAATAAAGGTG
CTGAGAAACGCAGTATTTCTGATAGTAAAATTTATCAAAATCTTAAGCAAGAAGTGAAATTTCAAGAGCTCATGGCACTT
GGAACGCCACAAGAAATTTATGACTGGTTGATGAACTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(582-730)

RecJ OB domain (RecJ_OB)

(450-556)

DHHA1 domain (DHHA1)

(317-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.028

100

0.675
  recJ Bacillus subtilis subsp. subtilis str. 168

37.935

100

0.402