Detailed information NTG0100555

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: QUD86_RS08560
• Genome accession: NZ_AP027274
• Coordinates: 1683576..1684466 (+)
• Length: 296 a.a.
• NCBI ID: WP_286296667.1
• Uniprot ID: -
• Organism: Polynucleobacter sp. TUM22923
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1678576..1689466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUD86_RS08530 (TUM22923_16620)	pth	1678775..1679371 (+)	597	WP_286296660.1	aminoacyl-tRNA hydrolase	-
QUD86_RS08535 (TUM22923_16630)	-	1679376..1679642 (-)	267	WP_286296661.1	YfhL family 4Fe-4S dicluster ferredoxin	-
QUD86_RS08540 (TUM22923_16640)	coaD	1679658..1680155 (-)	498	WP_286296664.1	pantetheine-phosphate adenylyltransferase	-
QUD86_RS08545 (TUM22923_16650)	rsmD	1680202..1680822 (-)	621	WP_286298730.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
QUD86_RS08550 (TUM22923_16660)	-	1680815..1682161 (-)	1347	WP_286296665.1	pitrilysin family protein	-
QUD86_RS08555 (TUM22923_16670)	-	1682161..1683549 (-)	1389	WP_286296666.1	pitrilysin family protein	-
QUD86_RS08560 (TUM22923_16680)	pilA	1683576..1684466 (+)	891	WP_286296667.1	signal recognition particle-docking protein FtsY	Machinery gene
QUD86_RS08565 (TUM22923_16690)	rpoH	1684645..1685496 (+)	852	WP_286298732.1	RNA polymerase sigma factor RpoH	-
QUD86_RS08570 (TUM22923_16700)	-	1685534..1686136 (-)	603	WP_286296668.1	SCO family protein	-
QUD86_RS08575 (TUM22923_16710)	cyoE	1686138..1687031 (-)	894	WP_286296669.1	heme o synthase	-
QUD86_RS08580 (TUM22923_16720)	-	1687028..1688137 (-)	1110	WP_286296671.1	COX15/CtaA family protein	-
QUD86_RS08585 (TUM22923_16730)	-	1688134..1688793 (-)	660	WP_286296673.1	hypothetical protein	-

Sequence

Protein

• Length: 296 a.a.
• Molecular weight: 31512.29 Da
• Isoelectric Point: 7.1749

>NTDB_id=100555 QUD86_RS08560 WP_286296667.1 1683576..1684466(+) (pilA) [Polynucleobacter sp. TUM22923]
MFGLRKTLGSLFASNRLDEAWFDTLEESLILSDVGLPTTDQLISKLRKAAKSEKAASPEVLKALLVQEVSSLLKPLEHPL
NPLYADRAKTALEVWLVVGVNGAGKTTTIGKLCRLFQAQGKSVLLAAGDTFRAAARNQLIEWGSRNHVDVITQESGDAAA
VAHDSIHAAISRKSDILIIDTAGRLATQDHLMEELKKVKRVIGKALPGAPHETLLILDGNTGQNGLSQVKAFHTALGLTA
LIVTKLDGTAKGGVICALAHTFNEGTKPAVLALGKGEGIDDLVPFAAEQYATELFN

Nucleotide

• Length: 891 bp

>NTDB_id=100555 QUD86_RS08560 WP_286296667.1 1683576..1684466(+) (pilA) [Polynucleobacter sp. TUM22923]
ATGTTCGGCCTACGTAAAACCCTCGGATCCCTTTTTGCATCTAACCGCTTGGATGAAGCTTGGTTTGATACCCTAGAAGA
ATCCCTTATTCTCAGTGATGTAGGTCTGCCAACCACCGACCAGCTCATCAGCAAGTTGCGTAAGGCGGCCAAATCAGAAA
AAGCAGCTAGTCCAGAGGTACTTAAAGCATTGTTGGTTCAAGAGGTATCAAGCCTTCTAAAGCCCCTCGAGCACCCATTA
AACCCCTTATATGCCGATAGAGCAAAGACCGCTCTAGAAGTATGGCTTGTTGTTGGTGTCAATGGCGCCGGCAAGACTAC
AACCATCGGCAAGCTGTGCCGCCTATTTCAGGCTCAAGGTAAATCAGTGCTTTTAGCTGCTGGCGATACCTTCAGAGCTG
CAGCCCGCAACCAATTGATTGAATGGGGGAGTCGCAATCATGTCGATGTCATTACCCAAGAAAGTGGTGATGCGGCTGCT
GTGGCCCATGACTCGATTCATGCAGCCATCTCTCGAAAGAGCGATATTCTCATTATTGATACTGCGGGCAGATTGGCTAC
CCAAGATCACCTCATGGAAGAGCTCAAGAAGGTTAAAAGAGTGATCGGCAAAGCCCTTCCTGGGGCGCCTCACGAAACTT
TGCTCATACTGGATGGCAACACCGGTCAGAACGGCTTAAGTCAGGTGAAGGCCTTTCATACAGCGCTTGGACTGACCGCC
TTAATCGTGACTAAGTTAGATGGGACTGCTAAAGGCGGCGTCATTTGCGCTTTGGCTCACACATTCAATGAAGGCACAAA
ACCTGCTGTTTTAGCCCTAGGCAAAGGTGAGGGTATTGATGACTTAGTGCCCTTTGCGGCCGAACAATATGCTACTGAAT
TATTCAATTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (93-295)

• SRP54-type protein, helical bundle domain (SRP54_N) (4-68)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.361	99.324	0.51