Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ABJ170_RS21610 Genome accession   NZ_CP157284
Coordinates   4838945..4839898 (-) Length   317 a.a.
NCBI ID   WP_348620630.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain F1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4833945..4844898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ170_RS21585 - 4834414..4835325 (-) 912 WP_322174707.1 aldo/keto reductase -
  ABJ170_RS21590 - 4835483..4836226 (-) 744 WP_348620626.1 alpha/beta hydrolase-fold protein -
  ABJ170_RS21595 - 4836260..4837240 (-) 981 WP_322174703.1 siderophore ABC transporter substrate-binding protein -
  ABJ170_RS21600 - 4837253..4838011 (-) 759 WP_039273792.1 ABC transporter ATP-binding protein -
  ABJ170_RS21605 - 4838005..4838955 (-) 951 WP_348620628.1 iron chelate uptake ABC transporter family permease subunit -
  ABJ170_RS21610 ceuB 4838945..4839898 (-) 954 WP_348620630.1 ABC transporter permease Machinery gene
  ABJ170_RS21615 - 4840228..4840905 (+) 678 WP_348622530.1 response regulator transcription factor -
  ABJ170_RS21620 - 4840902..4841819 (+) 918 WP_348622531.1 HAMP domain-containing sensor histidine kinase -
  ABJ170_RS21625 - 4841928..4842605 (+) 678 WP_348620632.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34728.73 Da        Isoelectric Point: 9.9012

>NTDB_id=1005400 ABJ170_RS21610 WP_348620630.1 4838945..4839898(-) (ceuB) [Paenibacillus polymyxa strain F1]
MKLRYLIVAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWPKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1005400 ABJ170_RS21610 WP_348620630.1 4838945..4839898(-) (ceuB) [Paenibacillus polymyxa strain F1]
ATGAAATTGCGTTATTTAATAGTGGCTTTTCTGGTACTGGCTTTCGCCTCGGTGTTTATTGGTGTTCATGATGTAACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAGGCGCAGGTGCTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGATTGATCATGCAGCAGCTTACCCGAAACCGATTTGTATCGCCCACCACCGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCGGGATTCTGGCCGAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTTATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGCATGTATATGGGGGATAATCTGAAAAAAAGTCTGGCTCATAC
AGCTATCCTGGGCGCCGTCTTTGTGCTGTTTTGTGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.794

99.369

0.505

Multiple sequence alignment