Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABJ170_RS12465 Genome accession   NZ_CP157284
Coordinates   2769549..2771399 (+) Length   616 a.a.
NCBI ID   WP_348622383.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain F1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2764549..2776399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ170_RS12445 - 2765293..2765520 (+) 228 Protein_2394 NAD(P)H-binding protein -
  ABJ170_RS12450 - 2765694..2766716 (+) 1023 WP_069291934.1 NADH:flavin oxidoreductase/NADH oxidase -
  ABJ170_RS12455 - 2767308..2767718 (+) 411 WP_013310356.1 MarR family transcriptional regulator -
  ABJ170_RS12460 rcrP 2767793..2769556 (+) 1764 WP_165179824.1 ABC transporter ATP-binding protein Regulator
  ABJ170_RS12465 rcrQ 2769549..2771399 (+) 1851 WP_348622383.1 ABC transporter ATP-binding protein Regulator
  ABJ170_RS12470 - 2771520..2771828 (+) 309 WP_348622384.1 hypothetical protein -
  ABJ170_RS12475 - 2772128..2772298 (+) 171 WP_348622385.1 hypothetical protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67946.55 Da        Isoelectric Point: 6.1590

>NTDB_id=1005389 ABJ170_RS12465 WP_348622383.1 2769549..2771399(+) (rcrQ) [Paenibacillus polymyxa strain F1]
MDKNEHTVDSQEMKMNQRGPMGKGPAGGKGTGEKANNFKKTISQLVSYSKAYVPMIILAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIIATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTIKLDTAKGDVEFKHVRFGYNADRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAACRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=1005389 ABJ170_RS12465 WP_348622383.1 2769549..2771399(+) (rcrQ) [Paenibacillus polymyxa strain F1]
ATGGATAAGAATGAACACACCGTCGACAGCCAGGAAATGAAAATGAACCAGCGAGGTCCCATGGGTAAAGGACCCGCGGG
GGGCAAGGGTACTGGTGAAAAAGCGAATAATTTTAAAAAGACCATCAGCCAGCTTGTATCCTACAGCAAGGCATATGTGC
CTATGATTATACTAGCTATGGTACTGGCCCTGGTCGGCTCTACCCTCAACGTGATTGGCCCCGATAAGCTCAGCGATATT
GCCAACCTGATTCAGGAAGGAATCGTGACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATCTTTAACTATTTCCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAACTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGT
GTAACCAACGATGTCGATACCATTGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGTGCGCTGGCTACCTTCGT
GGGCGCCTTGATTATGATGCTGTATACGAACTGGATCATGACCGTTACCGGAATTATAGCTACGCTGATCGGCTTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACTTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCTTATATACAAATGCATGGAAGTCCCAATTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTTGCGGTCTGTGTCGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACTATTGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCTGCAACCAATCTGCAGTCGGCGGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCATAAAGCTGGACACTGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGCTATAATGCAGATCGTATGATCATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTCGGTCCGACAGGCGCTGGTAAGACCACGCTCGTGAATTTGCTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGCACCCCGATTAGCCAATTAACGCGCGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTTTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACCGAT
GAGCAGGTGGAAGCTGCATGTAGAGCGGTGGGTCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGCT
GGATGACAAAGCCAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTCGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGACGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGTTGGCTAAAGGCGGCTTCTATGCCGATCTATACAATAGTCAGTTTGAAC
ATGCATCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(57-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.499

93.669

0.529

Multiple sequence alignment