Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ABJ170_RS12460 Genome accession   NZ_CP157284
Coordinates   2767793..2769556 (+) Length   587 a.a.
NCBI ID   WP_165179824.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain F1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2762793..2774556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ170_RS12440 aiiA 2763852..2764610 (-) 759 WP_348622382.1 N-acyl homoserine lactonase AiiA -
  ABJ170_RS12445 - 2765293..2765520 (+) 228 Protein_2394 NAD(P)H-binding protein -
  ABJ170_RS12450 - 2765694..2766716 (+) 1023 WP_069291934.1 NADH:flavin oxidoreductase/NADH oxidase -
  ABJ170_RS12455 - 2767308..2767718 (+) 411 WP_013310356.1 MarR family transcriptional regulator -
  ABJ170_RS12460 rcrP 2767793..2769556 (+) 1764 WP_165179824.1 ABC transporter ATP-binding protein Regulator
  ABJ170_RS12465 rcrQ 2769549..2771399 (+) 1851 WP_348622383.1 ABC transporter ATP-binding protein Regulator
  ABJ170_RS12470 - 2771520..2771828 (+) 309 WP_348622384.1 hypothetical protein -
  ABJ170_RS12475 - 2772128..2772298 (+) 171 WP_348622385.1 hypothetical protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64798.13 Da        Isoelectric Point: 7.7403

>NTDB_id=1005388 ABJ170_RS12460 WP_165179824.1 2767793..2769556(+) (rcrP) [Paenibacillus polymyxa strain F1]
MLKIFKYLKKNEWMLVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAVLILMLSVIVVFALPSFQRIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYCIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIMEVLNTE
SSIVNGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYNQQALHNKIGYVPQRAVLFNGTVVSNVSYGDNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=1005388 ABJ170_RS12460 WP_165179824.1 2767793..2769556(+) (rcrP) [Paenibacillus polymyxa strain F1]
ATGCTAAAGATATTCAAATATCTCAAGAAAAATGAATGGATGCTCGTACTTTGCAGCCTAGCTTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTGCCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACGGAAGGAACGCCTGTGTCCGAAC
TGCTGATTCCCGGCAGTTACATGTTGTTTTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTGGGCTATTTCGCGGCA
AAGGTGGCTGCTGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCTATGGAAGAGATGAA
CAGCTTTTCGACGGCAAGCCTCATTACCCGCTCCACGAACGATGTTACGCAGATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCACCTATTCTGGCCGTATGGGCTATTGTGAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCC
ACAGGAGCGGCCGTGGCTGTTCTGATTTTAATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTTCAGAGAATCCA
GCGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGATCGGACTTCGGGTAGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTTGAGTTGACGAATACAAACCTGTTCGCGAACCGATTAATGACGATG
ATTGGCCCCGGTATGACCTTTATTATGTCAGGTCTGAGTGTCTCTATCTATTGTATCGGCGCTTACCTGATTAACGGGGC
GGCCGTACCAGACCGCATCACGTTGTTCTCCAATATGGTCGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATATTCATTCTGATGCCTCGCGCCTCGATCTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGCATCGTTAACGGGCATGAGACGACTGGAGAAGAGAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCAGACGCGGAGGAGGCCGTGCTTCGCAACATTAGCTTTACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGAAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTATGATGTGACCGAGGGAGAGGTACTCGTGGAT
GGTGTGAATGTCAGGAACTATAATCAGCAGGCACTCCATAACAAAATCGGGTATGTCCCCCAGAGAGCTGTATTGTTCAA
CGGTACGGTTGTATCCAACGTTTCGTATGGCGATAACGGAAGAGCAGGAGCTTCGGAGAAACTCGTTAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTCGAAAAGATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAAATTTATATTTTCGATGATTCCTT
CTCGGCATTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCACGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACTATCAAAGACGCTGATCGGATTATCGTGCTGGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAAATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.421

100

0.535

Multiple sequence alignment