Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PL_RS14650 Genome accession   NZ_CP157278
Coordinates   3419726..3421102 (+) Length   458 a.a.
NCBI ID   WP_041883018.1    Uniprot ID   A0A0D0F4G8
Organism   Pedobacter lusitanus strain NL19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3414726..3426102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL_RS14620 (PL_002922) ssb 3414868..3415293 (-) 426 WP_041883024.1 single-stranded DNA-binding protein -
  PL_RS14625 (PL_002923) mutY 3415308..3416357 (-) 1050 WP_041883023.1 A/G-specific adenine glycosylase -
  PL_RS14630 (PL_002924) - 3416606..3416908 (+) 303 WP_041883022.1 HU family DNA-binding protein -
  PL_RS14635 (PL_002925) - 3416916..3417779 (+) 864 WP_041883021.1 tetratricopeptide repeat protein -
  PL_RS14640 (PL_002926) - 3417816..3417905 (+) 90 WP_008506795.1 hypothetical protein -
  PL_RS14645 (PL_002927) - 3418034..3419584 (+) 1551 WP_041883019.1 Rne/Rng family ribonuclease -
  PL_RS14650 (PL_002928) radA 3419726..3421102 (+) 1377 WP_041883018.1 DNA repair protein RadA Machinery gene
  PL_RS14655 (PL_002929) - 3421216..3423189 (+) 1974 WP_041883017.1 KUP/HAK/KT family potassium transporter -
  PL_RS14660 (PL_002930) carB 3423252..3426068 (-) 2817 WP_041883016.1 carbamoyl-phosphate synthase large subunit -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49992.34 Da        Isoelectric Point: 6.1270

>NTDB_id=1005371 PL_RS14650 WP_041883018.1 3419726..3421102(+) (radA) [Pedobacter lusitanus strain NL19]
MAKTKSAYFCQSCGYESAKWLGKCPSCNSWNTFVEEVIEKPGASVPAWQPSGSAKRSNKPNKITNIAFTEENKISTSDFE
LDRVLGGGLVAGSVVLIGGEPGIGKSTLMLQLALNITGKKVLYVSGEESEQQIKMRAERITSSPTAECYILTETSTQNIF
KQIEILEPDIIVVDSIQTLHSAHIDSTPGSVSQVRECTAELLRFAKETDTPVFLIGHITKDGAIAGPKILEHMVDTVLQF
EGDRHHVYRILRSIKNRFGAAAELGIYAMHSGGLRQVSNPSEILLSQRDEELSGIAIAATLEGARPMLIETQALVSTAAY
GTPQRSATGFDTRRMNMLLAVLEKRCGFRLSTRDVFLNIAGGIKVEDPAIDLAILAAIISSHEEIFISSKICFAAEVGLS
GEIRAVNRIEQRIAEADKLGFERIFVSNYNLKGLVTDKYKLEITGVNKIEDVFSLLFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1005371 PL_RS14650 WP_041883018.1 3419726..3421102(+) (radA) [Pedobacter lusitanus strain NL19]
TTGGCTAAAACTAAATCAGCATATTTCTGTCAGAGTTGTGGATATGAATCAGCCAAATGGCTTGGAAAATGTCCTTCGTG
TAATTCATGGAATACTTTCGTAGAGGAAGTAATTGAAAAACCAGGAGCTAGTGTACCTGCATGGCAGCCATCAGGTTCGG
CAAAAAGATCAAATAAGCCCAACAAGATTACCAATATAGCTTTTACCGAAGAGAATAAAATCTCGACGAGTGATTTTGAA
CTGGACCGTGTACTGGGTGGCGGCCTTGTTGCCGGCTCCGTTGTACTTATCGGCGGGGAACCCGGAATAGGGAAGTCTAC
CCTGATGTTACAGCTTGCTCTGAATATTACCGGGAAAAAAGTCCTGTACGTTTCAGGAGAAGAAAGTGAACAGCAGATCA
AAATGCGTGCGGAAAGAATAACCAGCAGTCCAACTGCTGAATGCTATATCCTTACTGAAACTTCTACTCAAAATATATTC
AAGCAGATAGAAATACTTGAACCGGATATTATTGTGGTAGATTCTATACAAACACTCCACTCTGCACATATTGACTCCAC
GCCGGGCAGTGTTTCACAGGTAAGGGAGTGTACCGCAGAATTATTACGTTTTGCCAAAGAAACTGATACTCCCGTATTTT
TAATTGGCCATATCACCAAAGACGGAGCCATCGCAGGCCCTAAAATCCTGGAGCACATGGTTGACACGGTTTTACAATTT
GAAGGTGACAGACATCATGTATACCGGATTCTCCGCTCCATCAAAAACAGATTCGGAGCTGCCGCAGAACTGGGTATATA
TGCCATGCACAGCGGTGGATTAAGACAGGTATCCAACCCTTCTGAAATTCTACTGTCCCAAAGAGACGAGGAATTAAGCG
GGATTGCCATTGCAGCAACCTTAGAAGGCGCCAGGCCCATGCTGATTGAAACACAGGCTTTGGTGAGTACTGCTGCATAC
GGAACGCCTCAGCGTTCTGCTACCGGCTTTGATACCAGAAGAATGAACATGCTGCTTGCAGTGCTGGAAAAAAGATGCGG
TTTCAGATTGAGTACAAGAGATGTATTTTTAAACATAGCCGGAGGGATTAAGGTGGAAGATCCTGCTATTGACCTGGCTA
TTCTGGCCGCGATTATCTCCTCGCATGAGGAAATTTTCATCTCTTCGAAAATCTGTTTTGCAGCAGAGGTAGGTTTATCC
GGCGAAATCCGGGCTGTCAACAGAATTGAACAGCGGATTGCTGAAGCAGATAAACTGGGTTTTGAAAGAATTTTTGTTTC
TAACTATAATCTGAAAGGACTGGTTACGGATAAATATAAACTTGAAATTACGGGTGTCAATAAAATTGAAGATGTTTTCT
CCCTGTTGTTCGGGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0F4G8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.41

100

0.517
  radA Streptococcus pneumoniae Rx1

48.69

100

0.487
  radA Streptococcus pneumoniae D39

48.69

100

0.487
  radA Streptococcus pneumoniae R6

48.69

100

0.487
  radA Streptococcus pneumoniae TIGR4

48.69

100

0.487
  radA Streptococcus mitis SK321

48.69

100

0.487
  radA Streptococcus mitis NCTC 12261

48.69

100

0.487

Multiple sequence alignment