Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ABFT51_RS23365 Genome accession   NZ_CP157265
Coordinates   5099158..5100111 (-) Length   317 a.a.
NCBI ID   WP_348623578.1    Uniprot ID   -
Organism   Paenibacillus peoriae strain MHJL1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5094158..5105111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT51_RS23340 (ABFT51_23340) - 5094627..5095538 (-) 912 WP_348623574.1 aldo/keto reductase -
  ABFT51_RS23345 (ABFT51_23345) - 5095696..5096439 (-) 744 WP_348623575.1 alpha/beta hydrolase-fold protein -
  ABFT51_RS23350 (ABFT51_23350) - 5096473..5097453 (-) 981 WP_348623576.1 siderophore ABC transporter substrate-binding protein -
  ABFT51_RS23355 (ABFT51_23355) - 5097466..5098224 (-) 759 WP_348623577.1 ABC transporter ATP-binding protein -
  ABFT51_RS23360 (ABFT51_23360) - 5098218..5099168 (-) 951 WP_316244224.1 iron chelate uptake ABC transporter family permease subunit -
  ABFT51_RS23365 (ABFT51_23365) ceuB 5099158..5100111 (-) 954 WP_348623578.1 ABC transporter permease Machinery gene
  ABFT51_RS23370 (ABFT51_23370) - 5100442..5101119 (+) 678 WP_348625335.1 response regulator transcription factor -
  ABFT51_RS23375 (ABFT51_23375) - 5101121..5102038 (+) 918 WP_348623579.1 HAMP domain-containing sensor histidine kinase -
  ABFT51_RS23380 (ABFT51_23380) - 5102146..5102823 (+) 678 WP_348623580.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34750.76 Da        Isoelectric Point: 9.9012

>NTDB_id=1005333 ABFT51_RS23365 WP_348623578.1 5099158..5100111(-) (ceuB) [Paenibacillus peoriae strain MHJL1]
MKLRYLMLAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1005333 ABFT51_RS23365 WP_348623578.1 5099158..5100111(-) (ceuB) [Paenibacillus peoriae strain MHJL1]
ATGAAATTGCGTTATTTAATGCTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGTTTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGGCTCATTATGCAGCAGCTTACCCGGAACCGATTTGTATCTCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCGGGATTCTGGACGAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTATCCTCTGTTGTCATCTTAACGGTTGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGCATGTATATGGGGGATAATCTAAAAAAAAGCCTGGCCCATAC
AGCAATCCTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTGGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.794

99.369

0.505

Multiple sequence alignment