Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ABFT51_RS13465 Genome accession   NZ_CP157265
Coordinates   2914910..2916673 (+) Length   587 a.a.
NCBI ID   WP_348625188.1    Uniprot ID   -
Organism   Paenibacillus peoriae strain MHJL1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2909910..2921673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT51_RS13440 (ABFT51_13440) - 2910606..2911478 (+) 873 WP_069292117.1 LysR family transcriptional regulator -
  ABFT51_RS13445 (ABFT51_13445) - 2911836..2912480 (+) 645 WP_348625185.1 SDR family oxidoreductase -
  ABFT51_RS13450 (ABFT51_13450) - 2912654..2913676 (+) 1023 WP_348625186.1 NADH:flavin oxidoreductase/NADH oxidase -
  ABFT51_RS13455 (ABFT51_13455) - 2913756..2913920 (+) 165 WP_348625187.1 xenobiotic reductase b -
  ABFT51_RS13460 (ABFT51_13460) - 2914425..2914835 (+) 411 WP_013310356.1 MarR family transcriptional regulator -
  ABFT51_RS13465 (ABFT51_13465) rcrP 2914910..2916673 (+) 1764 WP_348625188.1 ABC transporter ATP-binding protein Regulator
  ABFT51_RS13470 (ABFT51_13470) rcrQ 2916666..2918516 (+) 1851 WP_348625189.1 ABC transporter ATP-binding protein Regulator
  ABFT51_RS13475 (ABFT51_13475) - 2918637..2918945 (+) 309 WP_348625190.1 hypothetical protein -
  ABFT51_RS13480 (ABFT51_13480) - 2919215..2919424 (+) 210 WP_348625191.1 hypothetical protein -
  ABFT51_RS13485 (ABFT51_13485) - 2919381..2919728 (+) 348 WP_348625192.1 hypothetical protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64832.14 Da        Isoelectric Point: 7.7403

>NTDB_id=1005322 ABFT51_RS13465 WP_348625188.1 2914910..2916673(+) (rcrP) [Paenibacillus peoriae strain MHJL1]
MLKIFKYLKKNEWMLVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAVLILMLSVIVVFALPSFQRIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYCIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIMEVLNTE
SSIVNGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYNQQALHNKIGYVPQRAVLFNGTVVSNVSYGDNGRAGASEKFVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=1005322 ABFT51_RS13465 WP_348625188.1 2914910..2916673(+) (rcrP) [Paenibacillus peoriae strain MHJL1]
ATGCTAAAGATATTCAAATATCTCAAGAAAAATGAATGGATGCTCGTGCTTTGCAGCCTAGCTTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTACCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACGGAAGGAACGCCTGTGTCCGAAC
TGCTGATTCCCGGCAGTTACATGTTGTTTTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTGGGCTATTTCGCGGCA
AAGGTGGCTGCTGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCAATGGAAGAGATGAA
CAGCTTTTCGACGGCAAGCCTTATTACCCGCTCCACGAACGATGTTACGCAGATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCACCTATTCTGGCCGTATGGGCTATTGTGAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCC
ACAGGAGCGGCCGTGGCTGTTTTGATTTTAATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTTCAGAGAATCCA
GCGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGATCGGACTTCGGGTAGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTTGAGTTGACGAATACAAACCTGTTCGCGAACCGATTAATGACGATG
ATTGGCCCAGGTATGACCTTTATTATGTCAGGTCTGAGTGTCTCTATCTATTGTATCGGCGCTTACTTGATTAACGGGGC
GGCCGTACCAGACCGCATCACGTTGTTCTCCAATATGGTCGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATATTCATTCTGATGCCTCGCGCCTCGATCTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGCATCGTTAACGGGCATGAGACGACTGGAGAAGAGAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCAGACGCGGAGGAGGCCGTGCTTCGCAACATTAGCTTTACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGAAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTATGATGTGACCGAGGGAGAGGTACTCGTGGAT
GGTGTGAATGTCAGGAACTATAATCAGCAGGCACTCCATAACAAAATCGGGTATGTCCCCCAGAGAGCTGTACTGTTCAA
CGGTACGGTTGTATCCAACGTTTCGTATGGCGATAACGGAAGAGCAGGAGCTTCGGAGAAATTCGTTAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTCGAAAAAATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAAATTTATATTTTCGATGATTCCTT
CTCGGCATTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCACGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACTATCAAAGACGCTGATCGGATTATCGTGCTGGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAGATCGCATATTCGCAGCTTTCGAAGGAGGAACTTATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.421

100

0.535

Multiple sequence alignment