Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FGL06_RS00205 Genome accession   NZ_LR594042
Coordinates   27571..28326 (+) Length   251 a.a.
NCBI ID   WP_074639795.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 22571..33326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL06_RS00185 (NCTC8133_00036) mreD 23146..23652 (+) 507 WP_029876012.1 rod shape-determining protein MreD -
  FGL06_RS00190 (NCTC8133_00037) - 23754..25118 (+) 1365 WP_074484059.1 CHAP domain-containing protein -
  FGL06_RS00195 (NCTC8133_00038) - 25249..26220 (+) 972 WP_003067288.1 ribose-phosphate diphosphokinase -
  FGL06_RS00200 (NCTC8133_00039) - 26406..27581 (+) 1176 WP_126437515.1 pyridoxal phosphate-dependent aminotransferase -
  FGL06_RS00205 (NCTC8133_00040) recO 27571..28326 (+) 756 WP_074639795.1 DNA repair protein RecO Machinery gene
  FGL06_RS00210 (NCTC8133_00041) plsX 28462..29457 (+) 996 WP_126437516.1 phosphate acyltransferase PlsX -
  FGL06_RS00215 (NCTC8133_00042) - 29475..29717 (+) 243 WP_003067281.1 acyl carrier protein -
  FGL06_RS00220 (NCTC8133_00043) purC 29842..30552 (+) 711 WP_126437517.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29240.60 Da        Isoelectric Point: 6.4978

>NTDB_id=1005316 FGL06_RS00205 WP_074639795.1 27571..28326(+) (recO) [Streptococcus equinus strain NCTC8133]
MQTKETYGLVLYNRNYREDDKLVKIFTETDGKHMFFVRHAGKSRFNSVIQPLTIAKFIVKINDNGLSFIEDYKEVASFKE
INADLFKLSYASYVTSLADAAVPDNVADSQLFAFLNKTLSLMEEGLDYEILTNIFEIQILERFGISLNLHECAFCHRVGL
PFDFSHKYTGLLCPEHYVKDEHRSHVDPNMLYLLDRFQAIQFDELKTISVKPDMKRKLRLFIDDIYDNYVGVRLKSKKFI
DDLGSWGNIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=1005316 FGL06_RS00205 WP_074639795.1 27571..28326(+) (recO) [Streptococcus equinus strain NCTC8133]
ATGCAAACTAAAGAAACTTATGGTCTTGTCCTTTATAATCGTAATTATCGCGAGGATGATAAGCTAGTTAAGATTTTTAC
AGAAACAGATGGCAAGCATATGTTTTTTGTGAGACATGCGGGAAAATCTCGTTTTAATTCTGTGATTCAGCCGTTGACCA
TTGCTAAATTTATCGTAAAGATTAACGACAATGGTTTGTCGTTCATCGAGGATTATAAGGAAGTGGCTTCGTTTAAGGAA
ATCAATGCTGATTTATTTAAGTTGTCATATGCTTCTTATGTAACTTCTTTGGCTGATGCTGCTGTGCCTGATAATGTGGC
TGATTCGCAGTTGTTTGCTTTTTTGAACAAGACTTTATCTTTGATGGAAGAGGGTCTTGATTATGAAATCTTGACGAATA
TCTTTGAAATTCAGATTTTGGAGCGCTTTGGTATTAGTTTGAATCTGCATGAATGTGCGTTTTGTCATCGTGTAGGACTT
CCTTTTGATTTTTCTCATAAGTACACTGGCTTGCTTTGCCCAGAGCATTATGTAAAAGATGAGCATCGAAGTCACGTTGA
TCCGAATATGCTTTATCTGCTTGATCGTTTTCAAGCCATTCAATTTGATGAGTTAAAGACGATTTCGGTTAAACCTGATA
TGAAACGAAAACTGCGTTTATTTATCGATGATATCTATGATAACTATGTCGGTGTTCGATTGAAGAGTAAGAAGTTCATC
GATGATTTAGGTTCTTGGGGAAATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.745

100

0.637