Detailed information NTG0100522

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QUD69_RS00980
• Genome accession: NZ_AP027273
• Coordinates: 209455..210798 (+)
• Length: 447 a.a.
• NCBI ID: WP_269687897.1
• Uniprot ID: -
• Organism: Halopseudomonas aestusnigri strain MFKK
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 204455..215798

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUD69_RS00960 (MFKK_01880)	-	204612..205604 (+)	993	WP_269687893.1	outer membrane protein assembly factor BamD	-
QUD69_RS00965 (MFKK_01900)	-	205844..207475 (-)	1632	WP_269687894.1	NAD+ synthase	-
QUD69_RS00970 (MFKK_01910)	-	207604..207843 (+)	240	WP_269687895.1	PP0621 family protein	-
QUD69_RS00975 (MFKK_01920)	pilS	207824..209416 (+)	1593	WP_269687896.1	ATP-binding protein	Regulator
QUD69_RS00980 (MFKK_01930)	pilR	209455..210798 (+)	1344	WP_269687897.1	sigma-54 dependent transcriptional regulator	Regulator
QUD69_RS00985 (MFKK_01940)	thiO	210814..211908 (-)	1095	WP_269687898.1	glycine oxidase ThiO	-
QUD69_RS00990 (MFKK_01950)	mqo	212382..213863 (+)	1482	WP_269687899.1	malate dehydrogenase (quinone)	-
QUD69_RS00995 (MFKK_01960)	-	213860..214921 (-)	1062	WP_269687900.1	M48 family metallopeptidase	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 49690.86 Da
• Isoelectric Point: 6.0292

>NTDB_id=100522 QUD69_RS00980 WP_269687897.1 209455..210798(+) (pilR) [Halopseudomonas aestusnigri strain MFKK]
MMQPTVLIIDDEPDILELLELTLGRMSLQTRSAKTMGEALNLLQSHHFDLCLTDMRLPDGDGLSIVRHIQQHFTSTPVAM
ITAYGSLDTAISALKAGAFDFLTKPVDLARLRELVSTALRLRDSQTEPGPQAQDPILGISPPIERLRNQIGKLARSQAPL
YISGESGSGKELVARRIHALSPRAEQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVADKPGLFQAANHGTLFLDEVADL
PMAMQVKLLRAIQEKAVRAVGSQHEEAVDVRLLCATHKDLANEVAQGRFRQDLFYRINVIELQVPPLRARREDLPLLVRS
ILGRLAERANRPAPAVTEAGMERLLNYRFPGNVRELENALERAFTLCEGQQIDANDLWLSACPSAAQDDTPDFSQIDHLE
DYLDNIERQAITQALEETRWNKTAAAKRLGLTFRSLRYRLKKLGLDD

Nucleotide

• Length: 1344 bp

>NTDB_id=100522 QUD69_RS00980 WP_269687897.1 209455..210798(+) (pilR) [Halopseudomonas aestusnigri strain MFKK]
ATGATGCAACCCACCGTGCTGATCATCGACGACGAGCCGGACATTCTCGAATTGCTGGAGCTGACCCTCGGGCGCATGTC
GCTGCAAACCCGCAGCGCGAAAACCATGGGCGAAGCCTTGAACCTGCTGCAGTCTCACCACTTTGATCTGTGCCTGACGG
ACATGCGACTGCCTGACGGCGATGGCCTGAGCATCGTACGCCATATCCAGCAACACTTTACCAGCACCCCGGTCGCGATG
ATCACCGCCTATGGCAGTCTGGATACGGCGATCAGCGCACTCAAGGCCGGCGCATTTGACTTCCTGACCAAACCGGTCGA
TCTCGCCCGCCTGCGCGAGCTGGTCTCGACGGCACTGCGCCTGCGAGATTCGCAGACCGAACCCGGCCCCCAGGCACAGG
ACCCGATCCTCGGCATCTCGCCACCAATCGAGCGACTGCGCAACCAGATCGGCAAACTCGCCCGCAGCCAGGCGCCGCTG
TATATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTCGCATTCACGCGCTCAGCCCCAGAGCCGAACAGCC
CTTTGTACCGGTCAACTGCGGCGCCATACCGTCCGAGTTGATGGAAAGCGAGTTTTTCGGCCACCGCAAAGGCAGCTTTT
CCGGTGCAGTTGCCGACAAGCCGGGCCTGTTCCAGGCCGCCAATCACGGTACTCTGTTTCTCGACGAGGTCGCCGACCTC
CCGATGGCAATGCAGGTCAAACTGCTGCGAGCCATCCAGGAGAAGGCGGTCCGCGCCGTCGGCAGCCAGCACGAGGAAGC
GGTTGACGTACGTCTGTTGTGCGCCACCCACAAGGATCTCGCCAACGAGGTGGCCCAGGGGCGCTTCCGTCAGGACCTGT
TCTACCGCATCAACGTGATCGAACTGCAGGTGCCGCCGCTGCGGGCGCGCCGCGAGGACCTGCCGCTGCTGGTCCGCAGC
ATCCTCGGCCGCCTGGCCGAGCGCGCCAACCGTCCCGCGCCCGCGGTCACCGAGGCCGGTATGGAACGGCTGCTCAATTA
CCGCTTCCCGGGCAACGTACGCGAGCTGGAAAATGCGCTGGAGCGGGCCTTCACCCTGTGCGAAGGCCAGCAGATCGACG
CCAATGACCTGTGGCTCAGCGCCTGCCCAAGTGCGGCCCAGGATGACACTCCCGATTTCAGCCAGATCGACCATCTGGAG
GATTATCTGGACAACATCGAGCGCCAGGCGATCACCCAGGCACTGGAAGAGACCCGCTGGAACAAGACCGCCGCCGCCAA
GCGGCTGGGTCTCACCTTTCGCTCCCTGCGCTACCGCCTGAAGAAGCTGGGCCTGGACGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

• Response regulator receiver domain (Response_reg) (6-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	72.646	99.776	0.725
pilR	Acinetobacter baumannii strain A118	49.567	100	0.512