Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABI173_RS01720 Genome accession   NZ_CP157257
Coordinates   357602..358420 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 2024CK-00462     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352602..363420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI173_RS01690 (ABI173_01690) rpoZ 353353..353631 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABI173_RS01695 (ABI173_01695) gmk 353704..354333 (-) 630 WP_000015937.1 guanylate kinase -
  ABI173_RS01700 (ABI173_01700) ispH 354456..355406 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABI173_RS01705 (ABI173_01705) fimU 355576..356049 (+) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  ABI173_RS01710 (ABI173_01710) pilV 356043..356603 (+) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  ABI173_RS01715 (ABI173_01715) pilW 356604..357605 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  ABI173_RS01720 (ABI173_01720) pilX 357602..358420 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABI173_RS01725 (ABI173_01725) pilY1 358432..362286 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  ABI173_RS01730 (ABI173_01730) pilY2 362299..362781 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  ABI173_RS01735 (ABI173_01735) pilE 362778..363203 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1005206 ABI173_RS01720 WP_000149374.1 357602..358420(+) (pilX) [Acinetobacter baumannii strain 2024CK-00462]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1005206 ABI173_RS01720 WP_000149374.1 357602..358420(+) (pilX) [Acinetobacter baumannii strain 2024CK-00462]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment