Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABI154_RS09905 | Genome accession | NZ_CP157252 |
| Coordinates | 2104640..2105020 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 2024CK-00375 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2099640..2110020
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABI154_RS09875 (ABI154_09875) | tadA | 2099758..2100261 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| ABI154_RS09880 (ABI154_09880) | - | 2100268..2101392 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABI154_RS09885 (ABI154_09885) | ung | 2101389..2102102 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABI154_RS09890 (ABI154_09890) | - | 2102153..2102749 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ABI154_RS09895 (ABI154_09895) | gspK | 2102980..2103939 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ABI154_RS09900 (ABI154_09900) | xcpW | 2103939..2104640 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABI154_RS09905 (ABI154_09905) | xcpV | 2104640..2105020 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABI154_RS09910 (ABI154_09910) | - | 2105010..2105564 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABI154_RS09915 (ABI154_09915) | - | 2105574..2106182 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABI154_RS09920 (ABI154_09920) | - | 2106220..2106993 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABI154_RS09925 (ABI154_09925) | - | 2107011..2107352 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABI154_RS09930 (ABI154_09930) | - | 2107364..2108344 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ABI154_RS09935 (ABI154_09935) | kdsB | 2108356..2109117 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1005124 ABI154_RS09905 WP_000836911.1 2104640..2105020(-) (xcpV) [Acinetobacter baumannii strain 2024CK-00375]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1005124 ABI154_RS09905 WP_000836911.1 2104640..2105020(-) (xcpV) [Acinetobacter baumannii strain 2024CK-00375]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |