Detailed information    

insolico Bioinformatically predicted

Overview


Name   hns   Type   Regulator
Locus tag   ABI149_RS17120 Genome accession   NZ_CP157249
Coordinates   3598553..3598879 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 2024CK-00376     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 3593553..3603879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI149_RS17100 (ABI149_17100) - 3593653..3594282 (-) 630 WP_000219967.1 FHA domain-containing protein -
  ABI149_RS17105 (ABI149_17105) gspD 3594323..3596599 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  ABI149_RS17110 (ABI149_17110) - 3596641..3597477 (-) 837 WP_000870033.1 type II secretion system protein N -
  ABI149_RS17115 (ABI149_17115) gspN 3597477..3598220 (-) 744 WP_000730343.1 type II secretion system protein N -
  ABI149_RS17120 (ABI149_17120) hns 3598553..3598879 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  ABI149_RS17125 (ABI149_17125) - 3599074..3599514 (-) 441 WP_000661570.1 thioesterase family protein -
  ABI149_RS17130 (ABI149_17130) - 3599522..3600715 (-) 1194 WP_000681783.1 hypothetical protein -
  ABI149_RS17135 (ABI149_17135) - 3600725..3601564 (-) 840 WP_001230204.1 hypothetical protein -
  ABI149_RS17140 (ABI149_17140) - 3601573..3602340 (-) 768 WP_000897421.1 uroporphyrinogen-III synthase -
  ABI149_RS17145 (ABI149_17145) hemC 3602345..3603262 (-) 918 WP_031944971.1 hydroxymethylbilane synthase -

Sequence


Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=1005094 ABI149_RS17120 WP_000801427.1 3598553..3598879(-) (hns) [Acinetobacter baumannii strain 2024CK-00376]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1005094 ABI149_RS17120 WP_000801427.1 3598553..3598879(-) (hns) [Acinetobacter baumannii strain 2024CK-00376]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains


Predicted by InterproScan.

(12-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1


Multiple sequence alignment