Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PPECC33_RS14490 Genome accession   NZ_CP006632
Coordinates   2945854..2946369 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli PCN033     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2940854..2951369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPECC33_RS14465 (PPECC33_02908) ygaZ 2941253..2941990 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  PPECC33_RS14470 (PPECC33_02909) ygaH 2941980..2942315 (+) 336 WP_000119756.1 L-valine transporter subunit YgaH -
  PPECC33_RS14475 (PPECC33_02910) emrR 2942406..2942936 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  PPECC33_RS14480 (PPECC33_02912) emrA 2943063..2944235 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  PPECC33_RS14485 (PPECC33_02913) emrB 2944252..2945790 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  PPECC33_RS14490 (PPECC33_02914) luxS 2945854..2946369 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  PPECC33_RS14495 (PPECC33_02915) gshA 2946519..2948075 (-) 1557 WP_000611778.1 glutamate--cysteine ligase -
  PPECC33_RS14500 (PPECC33_02916) yqaA 2948148..2948576 (-) 429 WP_001287454.1 YqaA family protein -
  PPECC33_RS14505 (PPECC33_02917) yqaB 2948573..2949139 (-) 567 WP_000273312.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  PPECC33_RS14535 (PPECC33_02919) csrA 2950431..2950616 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=100508 PPECC33_RS14490 WP_001130211.1 2945854..2946369(-) (luxS) [Escherichia coli PCN033]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=100508 PPECC33_RS14490 WP_001130211.1 2945854..2946369(-) (luxS) [Escherichia coli PCN033]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment