Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABI149_RS10000 | Genome accession | NZ_CP157249 |
| Coordinates | 2122478..2122858 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 2024CK-00376 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2117478..2127858
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABI149_RS09970 (ABI149_09970) | tadA | 2117596..2118099 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| ABI149_RS09975 (ABI149_09975) | - | 2118106..2119230 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABI149_RS09980 (ABI149_09980) | ung | 2119227..2119940 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABI149_RS09985 (ABI149_09985) | - | 2119991..2120587 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ABI149_RS09990 (ABI149_09990) | gspK | 2120818..2121777 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ABI149_RS09995 (ABI149_09995) | xcpW | 2121777..2122478 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABI149_RS10000 (ABI149_10000) | xcpV | 2122478..2122858 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABI149_RS10005 (ABI149_10005) | - | 2122848..2123402 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABI149_RS10010 (ABI149_10010) | - | 2123412..2124020 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABI149_RS10015 (ABI149_10015) | - | 2124058..2124831 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABI149_RS10020 (ABI149_10020) | - | 2124849..2125190 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABI149_RS10025 (ABI149_10025) | - | 2125202..2126182 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ABI149_RS10030 (ABI149_10030) | kdsB | 2126194..2126955 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1005077 ABI149_RS10000 WP_000836911.1 2122478..2122858(-) (xcpV) [Acinetobacter baumannii strain 2024CK-00376]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1005077 ABI149_RS10000 WP_000836911.1 2122478..2122858(-) (xcpV) [Acinetobacter baumannii strain 2024CK-00376]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |