Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   FGL04_RS06425 Genome accession   NZ_LR594035
Coordinates   1234550..1235053 (-) Length   167 a.a.
NCBI ID   WP_138068612.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1229550..1240053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS06405 (NCTC5385_01397) budA 1229616..1230332 (-) 717 WP_138068609.1 acetolactate decarboxylase -
  FGL04_RS06410 (NCTC5385_01399) alsS 1230345..1232021 (-) 1677 Protein_1261 acetolactate synthase AlsS -
  FGL04_RS06415 (NCTC5385_01400) - 1232130..1233362 (-) 1233 WP_138068610.1 tetratricopeptide repeat protein -
  FGL04_RS06420 (NCTC5385_01401) - 1233352..1234533 (-) 1182 WP_138068611.1 AI-2E family transporter -
  FGL04_RS06425 (NCTC5385_01402) mutX 1234550..1235053 (-) 504 WP_138068612.1 NUDIX hydrolase Machinery gene
  FGL04_RS06430 (NCTC5385_01403) - 1235134..1236144 (+) 1011 WP_138068613.1 lactonase family protein -
  FGL04_RS06440 (NCTC5385_01404) - 1236502..1237440 (-) 939 WP_138068614.1 glycosyltransferase family 2 protein -
  FGL04_RS06445 (NCTC5385_01405) rfbB 1237618..1238664 (-) 1047 WP_138068615.1 dTDP-glucose 4,6-dehydratase -
  FGL04_RS06450 (NCTC5385_01406) - 1238709..1239305 (-) 597 WP_007893267.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 19535.04 Da        Isoelectric Point: 5.0911

>NTDB_id=1005046 FGL04_RS06425 WP_138068612.1 1234550..1235053(-) (mutX) [Streptococcus pseudoporcinus strain NCTC5385]
MTKLATICYIDDGKSLLLLHRNKKENDVHEGKWISVGGKLEPGESPDQCAIREIYEETHLKVEEMAFKGVITFPDFTPGH
DWYTYVFKVTAFSGQLISDQESREGTLEWVPYDQVLSKPTWEGDYDIFKWILEDRPFFSAKFRYGDNHQLLDKEVHFYDP
ALKVKHN

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1005046 FGL04_RS06425 WP_138068612.1 1234550..1235053(-) (mutX) [Streptococcus pseudoporcinus strain NCTC5385]
ATGACTAAATTAGCGACAATATGTTACATTGACGATGGTAAATCACTTTTGTTATTACATCGCAATAAAAAGGAAAACGA
TGTCCATGAAGGGAAATGGATTTCCGTCGGAGGAAAGCTTGAGCCAGGAGAAAGCCCCGATCAGTGTGCTATTAGAGAAA
TTTATGAAGAAACCCACTTAAAGGTTGAAGAGATGGCTTTTAAAGGAGTAATCACCTTTCCTGATTTTACACCTGGTCAT
GATTGGTATACCTATGTGTTTAAAGTGACGGCTTTTAGTGGTCAGTTGATCTCAGATCAGGAATCTCGAGAAGGAACCTT
AGAGTGGGTGCCCTATGATCAGGTCTTATCTAAGCCAACCTGGGAAGGTGATTACGATATTTTTAAATGGATTTTAGAGG
ATCGCCCCTTTTTCTCGGCTAAATTTAGATATGGTGACAATCACCAATTATTAGATAAAGAGGTTCATTTTTATGACCCT
GCTTTAAAAGTGAAACATAATTGA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(4-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

68.553

95.21

0.653

Multiple sequence alignment