Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   FGL00_RS03865 Genome accession   NZ_LR594034
Coordinates   752964..756188 (+) Length   1074 a.a.
NCBI ID   WP_138083780.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 747964..761188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL00_RS03840 (NCTC8546_00792) - 749186..749563 (+) 378 WP_003057473.1 OsmC family protein -
  FGL00_RS03845 (NCTC8546_00793) - 749556..749942 (+) 387 WP_138098333.1 DUF1722 domain-containing protein -
  FGL00_RS03850 (NCTC8546_00794) - 750015..751091 (+) 1077 WP_138098335.1 ABC transporter permease -
  FGL00_RS03855 (NCTC8546_00795) - 751101..751769 (+) 669 WP_065957296.1 ABC transporter ATP-binding protein -
  FGL00_RS03860 (NCTC8546_00796) - 751863..752789 (-) 927 WP_003057448.1 neutral zinc metallopeptidase -
  FGL00_RS03865 (NCTC8546_00797) rexB 752964..756188 (+) 3225 WP_138083780.1 ATP-dependent nuclease subunit B Machinery gene
  FGL00_RS03870 (NCTC8546_00798) rexA 756188..759817 (+) 3630 WP_172600606.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FGL00_RS03875 (NCTC8546_00799) - 759977..761092 (+) 1116 WP_138098800.1 aminotransferase -

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 123523.44 Da        Isoelectric Point: 5.2024

>NTDB_id=1004929 FGL00_RS03865 WP_138083780.1 752964..756188(+) (rexB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
MKLIYTEMTYSMTDILVAEARQAASRGYRVFYLAPNSLSFEKEREVLNLLPERGSFSITVTRFAQMARYFTFSNSESKQA
LDETALAMIFYRVLMQLTPEDLPVYGRLKDDPAFIKQLIDLYQELKTANLSVYELTELDTPGKQEDLIRIISLAEELMTQ
QDYHQDSALMSFAKTIETGQLDEQLSKTVLVIDGFSRFSAEEDYLLSLLNNKCQEIVIGSYISQKAYQKPFIKGNIYEAS
IQFLQGLAEQYKTKPIYSQSEKVFAPSFSRVTQLFEASHDFSQVDWQLEEKDKEDIYLWQSHQQKEEIEHVAKAIREKLY
EGYRYKDMLVLLGDVDAYQLQIGPIFDKFEIPYYLGKAEPMTAHPLVQFIESLERSQRYNWRREDILNLLKSGLFGRFAD
SDVDRFEEYLQFADIKGFTKFSRPFTINSSRHYPLELLNEVREAVFSSLQALFKSQKQLGTSLLDKLMTFFKDVQLAENM
KSLGQNELEIEKNEEVWKTFTGVLTSFYQIFGQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQPHSKPFV
YAIGLTQSHFPKQVKETGLLSDQERARINEITDSFQHFDIGSIENSKKNHQTALSLLNAATQELVLSVPAVVNEFSDDLS
PYLKELMSFGLPLIDKGSNRFSYAASDIGNYKALFSRLVDLNREAIVADMTEQDKTFWTVALRYLRRELRHHQVTLPMLD
DHLVTKPLASEVIEARFPSDRPLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIHPDARIHGQYLHRVFELVMTDHTAAS
FDSKLAQAIHQTNQEKEFQYIYQDSAEDRFSLDLLEDIAKSTASILRLNQNMTVSRQEEPFALHVTDQVVVHGIIDRIDQ
LSDGSLGIVDYKSSANQFDIGKFYNGLSPQLVTYLAALQQQLGPDDLGHLFGAMYLHLQEPKLDLASFKALDDKLVESIY
KELTYKGIFLESEKEYLANGAYQTRNALYSTEELQTLLTYNALLYKKAAEQIKKGHFVINPYTSDGKSVQGEQLKAITRF
EADLDLGQARHLVTLPAKDKRQQFLTLMRKEDNL

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=1004929 FGL00_RS03865 WP_138083780.1 752964..756188(+) (rexB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
ATGAAACTAATTTATACAGAAATGACCTATTCAATGACAGACATTTTGGTGGCTGAAGCAAGGCAGGCTGCCTCTCGAGG
TTACCGTGTCTTTTACCTTGCTCCAAACTCTCTCTCGTTTGAAAAGGAAAGAGAAGTATTGAACTTGCTACCAGAACGAG
GGTCTTTCTCCATTACCGTGACGCGTTTTGCTCAGATGGCAAGGTATTTTACATTCTCTAACTCTGAGTCAAAACAAGCC
TTAGACGAGACAGCCTTAGCCATGATTTTTTACCGCGTCTTAATGCAGTTAACCCCTGAAGATCTTCCTGTTTATGGTCG
CTTGAAAGACGATCCGGCTTTTATTAAGCAGCTAATTGATCTCTATCAAGAATTAAAAACGGCGAACCTTAGTGTCTATG
AGTTAACCGAGTTAGATACTCCCGGTAAACAAGAAGACCTAATAAGGATTATCTCCCTTGCCGAAGAACTCATGACTCAG
CAAGATTACCATCAAGACAGTGCGTTGATGTCCTTTGCTAAAACCATTGAAACAGGTCAATTGGACGAACAACTATCAAA
AACAGTGCTAGTTATTGATGGGTTTTCTCGTTTTTCTGCTGAAGAAGATTACCTATTATCTCTTCTTAACAACAAGTGTC
AAGAGATTGTGATAGGAAGTTATATTAGTCAGAAAGCCTACCAAAAACCGTTTATTAAAGGAAATATTTATGAGGCCAGT
ATCCAATTTTTGCAAGGGCTTGCTGAACAGTACAAGACAAAACCGATTTATTCTCAATCGGAAAAGGTTTTCGCGCCGTC
TTTTTCAAGAGTGACTCAGTTATTTGAAGCTAGCCATGATTTTTCTCAAGTAGATTGGCAATTGGAAGAAAAAGATAAAG
AAGACATTTACCTCTGGCAAAGTCATCAGCAAAAAGAAGAGATAGAGCATGTTGCTAAGGCTATTCGAGAAAAATTGTAT
GAAGGTTATCGCTATAAGGACATGTTGGTCTTGCTAGGAGATGTGGACGCCTACCAGTTGCAAATTGGTCCCATTTTTGA
CAAATTTGAGATTCCTTACTATTTAGGGAAGGCAGAACCCATGACCGCTCATCCCTTAGTGCAATTTATAGAATCTTTAG
AGCGGAGCCAGCGCTATAATTGGCGTCGTGAAGATATTTTAAACCTGCTCAAATCAGGACTTTTTGGAAGGTTTGCCGAT
AGTGACGTTGACCGCTTTGAAGAATACCTCCAATTTGCAGACATTAAAGGATTTACTAAATTTTCAAGGCCTTTTACGAT
TAATTCCTCTCGTCATTACCCATTAGAGTTGTTAAACGAGGTAAGAGAAGCTGTTTTTTCTTCGTTGCAAGCCTTATTTA
AGAGTCAAAAACAATTGGGAACGTCATTGCTAGATAAATTGATGACCTTTTTTAAAGACGTTCAGTTAGCAGAAAATATG
AAAAGCCTGGGCCAAAATGAGCTAGAAATCGAGAAAAATGAGGAAGTTTGGAAAACATTTACCGGCGTGTTAACCTCTTT
TTACCAGATTTTTGGTCAGGAAAAATTGAAACTGGCGGACTGTCTTTCCTTAATCAAAATGGGAATGCAGTCAGCCCACT
ATCGTATTGTTCCAGCTACTTTAGATGTTGTTTCTATCAAATCCTATGATTTGGTGCAACCTCACTCAAAACCTTTTGTT
TATGCTATTGGTCTTACGCAATCCCATTTTCCAAAGCAAGTCAAAGAGACAGGGCTACTTTCTGATCAAGAACGGGCAAG
AATTAACGAAATCACTGATAGCTTCCAGCATTTTGACATTGGCAGTATCGAAAATAGCAAGAAAAATCATCAGACAGCTC
TTTCGCTTTTGAATGCAGCCACTCAAGAATTGGTCCTGAGTGTCCCAGCAGTAGTGAACGAATTTTCAGATGACTTGTCT
CCTTACCTCAAGGAATTGATGTCCTTTGGTCTTCCACTGATTGATAAAGGAAGCAATCGCTTTTCTTATGCTGCTAGTGA
TATTGGCAACTATAAGGCCCTTTTTTCACGTTTAGTTGACCTTAATCGAGAAGCTATAGTAGCTGACATGACCGAACAGG
ACAAGACTTTTTGGACGGTTGCCCTTCGCTATCTCCGACGAGAATTAAGACATCATCAAGTCACACTTCCTATGCTAGAT
GACCATTTGGTGACGAAACCTCTAGCCTCCGAAGTTATTGAGGCACGTTTTCCAAGCGATAGACCGCTTAGACTATCATC
GACTGCTCTGACTGTTTTTTATAATAACCAGTACAAGTATTTTTTGCAGTATGTCCTAGGGCTACAAGAAGCCGAATCCA
TTCATCCTGATGCCCGCATTCATGGGCAATATTTACATCGGGTATTTGAATTGGTGATGACGGATCACACAGCAGCTTCC
TTTGACAGCAAATTGGCGCAAGCCATTCATCAAACTAACCAAGAAAAAGAGTTTCAATACATCTATCAAGACAGTGCTGA
AGATCGTTTCAGTTTAGACTTGCTTGAAGATATTGCTAAGTCAACCGCTTCTATTTTGCGTCTTAATCAGAATATGACTG
TCAGTCGACAAGAAGAACCTTTTGCCCTTCACGTGACAGATCAGGTAGTAGTCCATGGGATAATTGACCGGATTGACCAG
TTAAGTGATGGGAGTCTAGGGATTGTTGATTATAAATCCAGTGCGAATCAGTTTGATATCGGGAAATTTTACAATGGGTT
AAGCCCACAACTTGTTACTTATCTGGCTGCTTTGCAGCAACAACTTGGACCAGATGATTTAGGGCACTTATTTGGTGCCA
TGTACTTGCATTTGCAAGAGCCTAAGTTGGACTTAGCATCTTTCAAAGCACTTGATGATAAACTAGTTGAAAGTATTTAT
AAAGAATTGACCTATAAAGGAATCTTTTTAGAGTCTGAAAAAGAATATTTAGCAAATGGTGCTTACCAGACGCGAAATGC
ACTTTATTCCACTGAAGAGTTACAAACCCTCTTGACTTATAATGCTCTTCTTTACAAGAAAGCAGCAGAGCAGATTAAGA
AAGGGCATTTTGTCATTAACCCTTATACAAGTGATGGGAAGTCTGTTCAAGGAGAACAACTCAAGGCTATTACACGTTTT
GAGGCTGATCTTGATTTGGGCCAAGCAAGGCATCTTGTAACGCTCCCTGCCAAAGATAAGCGCCAGCAGTTTTTAACGTT
AATGAGAAAGGAGGATAACCTGTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(744-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

42.427

100

0.433