Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   FGK95_RS10095 Genome accession   NZ_LR590625
Coordinates   2032582..2035137 (-) Length   851 a.a.
NCBI ID   WP_093999157.1    Uniprot ID   -
Organism   Streptococcus canis strain B700072     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2027582..2040137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK95_RS10085 (SAMEA5186854_02024) - 2028308..2031481 (+) 3174 WP_232038593.1 serum opacification factor -
  FGK95_RS10090 (SAMEA5186854_02025) - 2031590..2032192 (+) 603 WP_232038594.1 hypothetical protein -
  FGK95_RS10095 (SAMEA5186854_02026) hexA 2032582..2035137 (-) 2556 WP_093999157.1 DNA mismatch repair protein MutS Machinery gene
  FGK95_RS10100 (SAMEA5186854_02027) - 2035124..2035477 (-) 354 WP_093999158.1 YlbF family regulator -
  FGK95_RS10105 (SAMEA5186854_02028) argR 2035474..2035911 (-) 438 WP_003045794.1 arginine repressor -
  FGK95_RS10110 (SAMEA5186854_02029) argS 2036191..2037882 (+) 1692 WP_093999159.1 arginine--tRNA ligase -
  FGK95_RS10115 (SAMEA5186854_02030) abc-f 2037934..2039343 (-) 1410 WP_093999179.1 ribosomal protection-like ABC-F family protein -

Sequence


Protein


Download         Length: 851 a.a.        Molecular weight: 95032.60 Da        Isoelectric Point: 5.0572

>NTDB_id=1004882 FGK95_RS10095 WP_093999157.1 2032582..2035137(-) (hexA) [Streptococcus canis strain B700072]
MAKANISPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVKAAQLLEIGLTSRNKNAENPIPMAGVPHHSAQQYIDVLI
ELGYKVAIAEQMEDPKQAVGVVKREVVQVITPGTVVDSTKPDSANNFLVAVDFDGYRYGLAYMDVSTGEFCVTDLADFTS
VRSEIQNLKAKEVLLGFDLSEVEQAILVKQMNLLLSYEDTIYEDSTLIDNQLTAVELSAAGKLLQYVHKTQMRELSHLQA
LVHYEIKDYLQMSYATKSSLDLVENARTNKKHGSLYWLLDETKTAMGMRLLRSWIDRPLVSKEAILERQEIIQVFLNAFI
ERTDLSNSLKGVYDIERLSSRVSFGKANPKDLLQLGHTLAQVPAIKAILEAFNSAHIDKLVKQLDTLPELEYLIRTAIDP
DAPATISEGSIIRTGFDERLDHYRKVMREGTGWIADIEAKERQASGINNLKIDYNKKDGYYFHVTNSNLGLVPDHFFRKA
TLKNSERYGTAELAKIEGQMLEAREESASLEYDIFMRIRAQVETYINRLQKLAKTLATVDVLQSLAVVAETNHYSRPSFN
DDHVIKIQDGRHAVVEKVMGVQEYIPNSISFDQKTSIQLITGPNMSGKSTYMRQLALTVIMAQMGSFVAADHVDLPLFDA
IFTRIGAADDLISGQSTFMVEMMEANQAIKRASANSLILFDELGRGTATYDGMALAQAIIEYIHDRVGAKTMFATHYHEL
TELSSKLTQLVNVHVATLEKDGDVTFLHKIAEGPADKSYGIHVAKIAGLPEALLSRADDVLTRLEAQSQSAEIISVPSKA
EQASPVKDEQLSLFAADDKAQKVIQALEAIDVLNITPLEAMTALYELKKLL

Nucleotide


Download         Length: 2556 bp        

>NTDB_id=1004882 FGK95_RS10095 WP_093999157.1 2032582..2035137(-) (hexA) [Streptococcus canis strain B700072]
ATGGCAAAAGCTAACATTTCTCCTGGAATGCAACAGTATCTGGACATCAAAAAAGATTATCCAGATGCTTTTTTGCTTTT
TAGGATGGGTGACTTTTACGAGTTATTTTACGATGATGCTGTCAAGGCAGCGCAACTTTTAGAGATTGGTTTGACCAGTC
GCAACAAGAATGCGGAAAATCCAATTCCTATGGCAGGAGTGCCCCATCACTCTGCCCAGCAATACATTGATGTGTTAATT
GAATTGGGCTACAAGGTGGCTATTGCAGAACAAATGGAAGATCCCAAACAAGCTGTTGGGGTAGTTAAGCGTGAAGTTGT
TCAAGTGATTACACCAGGGACAGTTGTTGATTCAACCAAGCCAGATAGTGCCAACAACTTTTTGGTAGCTGTTGACTTTG
ATGGTTACCGTTATGGATTGGCTTACATGGATGTGTCGACGGGTGAATTTTGCGTGACAGATTTGGCAGATTTCACAAGT
GTTCGTAGTGAAATTCAGAATCTCAAAGCAAAGGAAGTATTGTTAGGATTTGATTTGTCAGAGGTAGAGCAAGCTATTCT
GGTGAAGCAGATGAATCTGCTACTTTCCTATGAGGATACGATTTATGAAGATAGTACTCTGATTGACAATCAGTTGACAG
CAGTGGAGCTGTCAGCGGCAGGGAAACTCTTGCAATACGTTCATAAGACTCAAATGCGAGAACTTAGCCATTTGCAAGCA
TTGGTTCATTATGAAATCAAAGATTACTTACAAATGTCTTATGCTACCAAGTCAAGTTTGGATTTGGTTGAAAATGCCAG
AACAAATAAGAAACATGGCAGTCTCTACTGGCTTTTAGATGAGACCAAGACAGCTATGGGAATGCGTCTTTTACGGTCAT
GGATTGACAGACCTTTGGTTTCTAAAGAAGCTATCTTAGAACGCCAAGAGATTATTCAAGTTTTCTTAAACGCTTTTATT
GAGCGCACAGATTTAAGCAACAGTCTAAAAGGTGTTTACGATATTGAACGTTTGTCTAGTCGCGTTTCATTTGGCAAAGC
AAATCCTAAGGACTTGCTTCAATTGGGACACACATTGGCTCAAGTGCCAGCCATTAAAGCTATTTTAGAAGCTTTCAATA
GTGCTCATATTGATAAGCTTGTCAAGCAGCTTGACACACTGCCTGAGTTGGAATACCTGATACGAACAGCTATTGATCCT
GACGCACCAGCGACTATTAGTGAAGGCAGTATTATCCGAACTGGTTTTGATGAACGCTTGGATCATTACCGTAAAGTGAT
GCGAGAAGGAACAGGCTGGATTGCAGATATTGAGGCTAAGGAACGTCAAGCAAGTGGCATTAATAACCTAAAAATTGATT
ACAATAAAAAAGATGGTTATTATTTCCACGTTACGAATTCAAATCTTGGCTTAGTGCCTGATCACTTTTTCAGAAAGGCT
ACTTTAAAAAATTCAGAACGTTATGGAACGGCAGAATTAGCTAAAATTGAAGGTCAGATGCTAGAGGCTAGAGAAGAATC
AGCTAGTCTAGAATACGATATTTTTATGCGTATTCGAGCTCAAGTGGAAACCTATATTAATCGCTTGCAGAAGCTTGCCA
AAACCTTGGCAACGGTTGATGTCTTGCAAAGTTTAGCAGTTGTTGCTGAGACGAACCATTACAGTCGGCCTAGTTTCAAT
GATGACCATGTGATTAAGATTCAAGATGGGCGTCATGCTGTTGTTGAAAAAGTTATGGGAGTGCAAGAATACATTCCAAA
TAGTATTTCCTTTGATCAAAAAACAAGTATCCAATTGATTACGGGACCAAATATGAGTGGTAAGTCTACTTATATGCGGC
AGCTTGCCTTAACGGTTATCATGGCACAGATGGGCTCGTTTGTGGCTGCTGACCATGTCGATTTGCCTTTGTTTGATGCT
ATTTTCACACGTATTGGAGCTGCTGATGATTTGATTTCTGGACAATCAACCTTTATGGTGGAGATGATGGAAGCAAACCA
AGCGATCAAACGTGCCAGTGCCAATTCGCTCATTTTATTTGATGAATTAGGACGAGGAACGGCAACCTATGATGGTATGG
CTCTAGCTCAGGCCATTATCGAATATATCCACGATAGGGTTGGTGCTAAAACCATGTTTGCAACGCACTATCATGAGTTG
ACAGAGTTGTCAAGCAAATTGACACAGTTAGTCAACGTTCATGTAGCAACGCTTGAAAAAGATGGAGATGTAACCTTCCT
TCACAAGATTGCGGAAGGGCCGGCAGACAAATCATACGGTATTCATGTGGCTAAAATAGCAGGACTTCCTGAAGCTCTAT
TAAGCAGAGCCGATGACGTTCTTACCCGCTTAGAAGCACAGTCACAATCTGCTGAAATAATATCAGTTCCTTCAAAAGCT
GAGCAAGCAAGTCCTGTTAAAGACGAGCAATTATCACTTTTTGCTGCTGATGATAAAGCTCAGAAAGTTATTCAAGCCTT
AGAAGCCATTGATGTTCTGAATATCACTCCTTTAGAGGCCATGACTGCCCTTTATGAATTGAAAAAGTTATTATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

71.395

100

0.716

  mutS Pseudomonas stutzeri strain ATCC 17587

37.31

100

0.375


Multiple sequence alignment