Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABI226_RS12200 Genome accession   NZ_CP157216
Coordinates   2345039..2345659 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS22     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2340039..2350659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI226_RS12160 (ABI226_12160) ypqE 2341170..2341676 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  ABI226_RS12165 (ABI226_12165) ypqA 2341814..2342233 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  ABI226_RS12170 (ABI226_12170) yppG 2342254..2342631 (-) 378 WP_004398696.1 YppG family protein -
  ABI226_RS12175 (ABI226_12175) yppF 2342819..2343007 (+) 189 WP_003230690.1 YppF family protein -
  ABI226_RS12180 (ABI226_12180) yppE 2343046..2343417 (-) 372 WP_003246080.1 YppE family protein -
  ABI226_RS12185 (ABI226_12185) yppD 2343463..2343708 (-) 246 WP_004398488.1 YppD family protein -
  ABI226_RS12190 (ABI226_12190) sspM 2343907..2344011 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ABI226_RS12195 (ABI226_12195) yppC 2344036..2344998 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  ABI226_RS12200 (ABI226_12200) recU 2345039..2345659 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ABI226_RS12205 (ABI226_12205) ponA 2345681..2348425 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  ABI226_RS12210 (ABI226_12210) ypoC 2348501..2348995 (-) 495 WP_009967579.1 YpoC family protein -
  ABI226_RS12215 (ABI226_12215) nth 2348992..2349651 (-) 660 WP_009967580.1 endonuclease III -
  ABI226_RS12220 (ABI226_12220) dnaD 2349670..2350368 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1004837 ABI226_RS12200 WP_004399067.1 2345039..2345659(+) (recU) [Bacillus subtilis subsp. subtilis isolate FELIX_MS22]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1004837 ABI226_RS12200 WP_004399067.1 2345039..2345659(+) (recU) [Bacillus subtilis subsp. subtilis isolate FELIX_MS22]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment