Detailed information NTG1004828

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FGK95_RS03660
• Genome accession: NZ_LR590625
• Coordinates: 709209..710318 (+)
• Length: 369 a.a.
• NCBI ID: WP_138114117.1
• Uniprot ID: -
• Organism: Streptococcus canis strain B700072
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 704209..715318

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGK95_RS03635 (SAMEA5186854_00717)	-	704293..705408 (+)	1116	WP_093998514.1	aminotransferase	-
FGK95_RS03640 (SAMEA5186854_00718)	-	705476..706288 (+)	813	WP_093998515.1	transporter substrate-binding domain-containing protein	-
FGK95_RS03645 (SAMEA5186854_00719)	rpsU	706390..706566 (+)	177	WP_000048058.1	30S ribosomal protein S21	-
FGK95_RS03650 (SAMEA5186854_00720)	mscL	706885..707259 (-)	375	WP_003047993.1	large conductance mechanosensitive channel protein MscL	-
FGK95_RS03655 (SAMEA5186854_00721)	dnaG	707386..709200 (+)	1815	WP_093998516.1	DNA primase	-
FGK95_RS03660 (SAMEA5186854_00722)	rpoS	709209..710318 (+)	1110	WP_138114117.1	RNA polymerase sigma factor RpoD	Regulator
FGK95_RS03665 (SAMEA5186854_00723)	-	710596..710934 (+)	339	WP_003047996.1	metal-sulfur cluster assembly factor	-
FGK95_RS03670 (SAMEA5186854_00724)	rfbD	711072..711926 (+)	855	WP_003047997.1	dTDP-4-dehydrorhamnose reductase	-
FGK95_RS03675 (SAMEA5186854_00725)	cps2T	712045..713193 (+)	1149	WP_003047998.1	beta 1-4 rhamnosyltransferase Cps2T	-
FGK95_RS03680 (SAMEA5186854_00726)	-	713190..714128 (+)	939	WP_003047999.1	glycosyltransferase family 2 protein	-
FGK95_RS03685 (SAMEA5186854_00727)	-	714125..714931 (+)	807	WP_093998518.1	ABC transporter permease	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42188.94 Da
• Isoelectric Point: 4.5491

>NTDB_id=1004828 FGK95_RS03660 WP_138114117.1 709209..710318(+) (rpoS) [Streptococcus canis strain B700072]
MTKEKEITTFNVQVAEFIRHHKKEGTAIDDDVTETLVIPFALDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEELIGSNSAKVNDPVRMYLKEIGVVPLLTSEEEKALAVAVAEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFMED

Nucleotide

• Length: 1110 bp

>NTDB_id=1004828 FGK95_RS03660 WP_138114117.1 709209..710318(+) (rpoS) [Streptococcus canis strain B700072]
ATGACAAAAGAAAAAGAAATTACAACTTTTAATGTTCAAGTTGCGGAGTTTATTCGTCATCATAAAAAAGAAGGAACAGC
GATTGATGATGACGTGACTGAAACACTCGTCATTCCATTTGCCTTGGACGCTGATCAAATCGACGACCTACTTGAGCGGC
TAACAGATGGTGGCATTTCCATTACAGATAAGGAGGGCAACCCTTCATCAAAATACGTGGTTGAAGAACCTAAACCCGAA
GAGCTGACTGATGAGGAATTAATTGGAAGCAATTCTGCTAAGGTAAATGACCCTGTCCGTATGTACCTCAAAGAAATCGG
TGTCGTACCACTTCTGACAAGTGAAGAAGAAAAGGCATTGGCGGTTGCTGTAGCAGAAGGTGATCTAGAAGCTAAACAAC
GTTTAGCAGAAGCCAACTTGCGTCTGGTAGTCTCTATTGCTAAACGTTATGTCGGTCGCGGCATGCAATTCTTGGATTTG
ATTCAAGAAGGCAATATGGGGTTGATGAAAGCTGTTGATAAATTTGACTATTCCAAAGGGTTTAAGTTTTCAACCTACGC
TACATGGTGGATTCGCCAAGCCATTACTCGTGCTATTGCTGACCAAGCACGTACCATTCGTATCCCAGTTCACATGGTAG
AAACCATTAACAAATTGGTTCGTGAGCAACGTAATTTATTGCAGGAATTAGGACAAGATCCAACACCAGAACAAATTGCA
GAACGCATGGAAATGACACCTGATAAGGTTCGTGAAATTTTGAAAATTGCTCAAGAGCCAGTCTCTCTAGAAACCCCAAT
TGGTGAAGAAGATGATAGCCACTTGGGTGATTTTATCGAAGATGAAGTCATTGAAAATCCAGTTGACTACACAACACGCG
TGGTTCTTCGTGAACAGTTGGATGAGGTCTTGGACACATTAACAGACCGTGAGGAAAATGTTCTCCGCCTACGTTTTGGA
CTTGACGATGGTAAAATGCGTACCCTTGAAGATGTGGGCAAAGTCTTTAACGTCACCCGTGAACGTATCCGTCAAATTGA
AGCTAAGGCACTTCGCAAACTTCGCCACCCAAGCCGCAGTAAGCAATTAAGAGATTTTATGGAGGACTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (13-85)

• Sigma-70 region 3 (Sigma70_r3) (214-290)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	45.578	79.675	0.363