Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ABI116_RS19600 Genome accession   NZ_CP157214
Coordinates   3739768..3740109 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3734768..3745109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI116_RS19585 (ABI116_19585) hepA 3735011..3737779 (+) 2769 WP_003227803.1 DEAD/DEAH box helicase -
  ABI116_RS19590 (ABI116_19590) ywpJ 3737905..3738762 (-) 858 WP_003242946.1 phosphatase YwpJ -
  ABI116_RS19595 (ABI116_19595) glcR 3738768..3739544 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  ABI116_RS19600 (ABI116_19600) ssbB 3739768..3740109 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  ABI116_RS19605 (ABI116_19605) ywpG 3740186..3740569 (-) 384 WP_003227796.1 DynA interaction protein YwpG -
  ABI116_RS19610 (ABI116_19610) ywpF 3740744..3741154 (+) 411 WP_003227794.1 YwpF-like family protein -
  ABI116_RS19615 (ABI116_19615) - 3741294..3741686 (-) 393 Protein_3805 class A sortase -
  ABI116_RS19620 (ABI116_19620) - 3741673..3742062 (-) 390 WP_009968292.1 prealbumin-like fold domain-containing protein -
  ABI116_RS19625 (ABI116_19625) ywpD 3741946..3742782 (+) 837 WP_003227787.1 histidine kinase -
  ABI116_RS19630 (ABI116_19630) mscL 3742829..3743221 (-) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  ABI116_RS19635 (ABI116_19635) fabZ 3743294..3743719 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ABI116_RS19640 (ABI116_19640) rapD 3743911..3744975 (+) 1065 WP_003227782.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=1004787 ABI116_RS19600 WP_003227798.1 3739768..3740109(-) (ssbB) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=1004787 ABI116_RS19600 WP_003227798.1 3739768..3740109(-) (ssbB) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment