Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAA969_RS05730 Genome accession   NZ_AP027270
Coordinates   1239829..1241205 (-) Length   458 a.a.
NCBI ID   WP_338244528.1    Uniprot ID   -
Organism   Maricaulis maris strain Dej080120_02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1234829..1246205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA969_RS05710 (MACH15_11250) der 1235488..1236960 (+) 1473 WP_338244519.1 ribosome biogenesis GTPase Der -
  AAA969_RS05715 (MACH15_11260) - 1236979..1237695 (-) 717 WP_338244522.1 SDR family NAD(P)-dependent oxidoreductase -
  AAA969_RS05720 (MACH15_11270) purF 1237692..1239173 (-) 1482 WP_338244524.1 amidophosphoribosyltransferase -
  AAA969_RS05725 (MACH15_11280) - 1239170..1239814 (-) 645 WP_338244526.1 CvpA family protein -
  AAA969_RS05730 (MACH15_11290) radA 1239829..1241205 (-) 1377 WP_338244528.1 DNA repair protein RadA Machinery gene
  AAA969_RS05735 (MACH15_11300) alr 1241298..1242410 (-) 1113 WP_338244530.1 alanine racemase -
  AAA969_RS05740 (MACH15_11310) - 1242391..1243875 (-) 1485 WP_338244532.1 replicative DNA helicase -
  AAA969_RS05745 (MACH15_11330) rplI 1244060..1244695 (-) 636 WP_338244535.1 50S ribosomal protein L9 -
  AAA969_RS05750 (MACH15_11340) rpsR 1244708..1244962 (-) 255 WP_011643151.1 30S ribosomal protein S18 -
  AAA969_RS05755 (MACH15_11350) rpsF 1244974..1245327 (-) 354 WP_338244538.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 47885.79 Da        Isoelectric Point: 5.2201

>NTDB_id=100477 AAA969_RS05730 WP_338244528.1 1239829..1241205(-) (radA) [Maricaulis maris strain Dej080120_02]
MARVENTYVCQSCGGVQSKWAGRCDACGQWNTLVEETPSAPLGTQATAAKRRGRSARLNLVDLGSESPEPARLQSGISEL
DRVCGGGLVPGSAILVGGDPGIGKSTLLLQMMAQIARSDARAIYVSGEEAIDQVRRRARRLGLADAPVSLASETALNDIL
DGLKAEKPDIVVIDSIQTVWSDQLAAAPGTVAQVRACAQELVRFAKKSNCTVILVGHVTKDGQIAGPRVVEHMVDAVLYF
EGERSHQFRILRAVKNRFGPTDEIGVFEMGDKGLAEVMNPSSLFLDGRGGDTPGAAVFAGMEGTRPVLSEIQALVAPAAF
GTPRRAVVGWDSGRLAMVLAVLEARCCVELAGRDIFLNVAGGLKITEPAADLAVAAAIVSSALDVALPADGVVYGEISLS
GDVRPVGRSDSRLKEAAKLGFSRAIAPQAAADETAPIRVDGVATALELVQTLRAMAGE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=100477 AAA969_RS05730 WP_338244528.1 1239829..1241205(-) (radA) [Maricaulis maris strain Dej080120_02]
ATGGCACGCGTCGAAAACACTTATGTCTGCCAATCCTGCGGCGGGGTTCAGTCCAAATGGGCCGGGCGCTGTGATGCCTG
CGGCCAGTGGAACACGCTGGTCGAGGAAACGCCGTCGGCACCGCTTGGCACGCAGGCAACCGCCGCCAAACGGCGCGGGC
GTTCGGCGCGGCTGAACCTGGTCGATCTCGGTTCCGAGAGCCCCGAACCGGCACGTCTGCAATCGGGTATCAGTGAGCTG
GACCGGGTGTGCGGCGGCGGGCTGGTCCCCGGTTCGGCCATCCTTGTGGGCGGTGATCCCGGTATCGGCAAATCCACGCT
CCTCCTACAGATGATGGCGCAGATCGCCCGTAGCGACGCCCGCGCCATCTACGTCTCGGGCGAGGAAGCCATCGATCAGG
TCCGGCGCCGGGCCCGACGCCTTGGCCTCGCCGATGCGCCCGTTTCGCTGGCCTCGGAAACCGCGCTCAACGACATCCTT
GACGGTCTGAAAGCAGAAAAGCCGGACATTGTCGTCATCGATTCAATCCAGACTGTCTGGTCGGATCAACTTGCGGCGGC
GCCCGGTACGGTGGCCCAGGTCCGGGCCTGCGCCCAGGAGCTGGTCCGCTTCGCCAAGAAGAGCAATTGCACCGTTATTC
TCGTCGGCCATGTCACCAAGGATGGTCAGATCGCCGGGCCGCGCGTGGTCGAACACATGGTCGATGCCGTGCTCTATTTC
GAGGGCGAACGCTCGCACCAGTTCCGCATCCTGCGCGCGGTCAAGAACCGCTTCGGGCCGACCGACGAGATCGGTGTGTT
CGAGATGGGCGACAAGGGGCTGGCGGAAGTCATGAACCCCTCGTCGCTCTTCCTCGATGGTCGCGGCGGCGATACGCCCG
GCGCGGCCGTCTTCGCCGGCATGGAGGGAACGCGTCCGGTCCTGTCGGAAATCCAGGCCCTGGTGGCGCCGGCGGCCTTC
GGCACACCCCGTCGGGCCGTAGTCGGTTGGGACAGCGGCCGGCTGGCCATGGTTCTTGCCGTCCTGGAAGCACGGTGCTG
CGTGGAACTGGCGGGCCGCGACATCTTTCTCAACGTGGCCGGCGGTCTGAAGATCACTGAGCCGGCGGCCGATCTTGCCG
TCGCCGCCGCGATCGTCTCGTCGGCACTGGATGTCGCCCTGCCCGCAGATGGCGTCGTTTACGGAGAAATCAGTCTTTCC
GGCGATGTTCGTCCGGTCGGACGCAGTGATTCGCGCCTCAAGGAAGCCGCCAAACTCGGTTTCTCGCGGGCCATCGCCCC
CCAGGCTGCAGCTGACGAGACCGCTCCGATCCGGGTCGATGGCGTGGCCACGGCGCTCGAATTGGTGCAGACTCTCCGGG
CAATGGCGGGCGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.913

100

0.491
  radA Streptococcus pneumoniae Rx1

44.231

100

0.452
  radA Streptococcus pneumoniae R6

44.231

100

0.452
  radA Streptococcus pneumoniae TIGR4

44.231

100

0.452
  radA Streptococcus pneumoniae D39

44.231

100

0.452
  radA Streptococcus mitis SK321

44.017

100

0.45
  radA Streptococcus mitis NCTC 12261

44.017

100

0.45

Multiple sequence alignment