Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | ABI116_RS13935 | Genome accession | NZ_CP157214 |
| Coordinates | 2651949..2652359 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis subsp. subtilis isolate FELIX_MS21 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2647315..2698805 | 2651949..2652359 | within | 0 |
Gene organization within MGE regions
Location: 2647315..2698805
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABI116_RS13910 (ABI116_13910) | yqeF | 2647482..2648213 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| ABI116_RS13915 (ABI116_13915) | cwlH | 2648465..2649217 (-) | 753 | WP_003229963.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| ABI116_RS13920 (ABI116_13920) | yqeD | 2649404..2650030 (+) | 627 | WP_003229962.1 | TVP38/TMEM64 family protein | - |
| ABI116_RS13925 (ABI116_13925) | gnd | 2650049..2650942 (-) | 894 | WP_003229961.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| ABI116_RS13930 (ABI116_13930) | yqeB | 2651194..2651916 (+) | 723 | WP_010886572.1 | hypothetical protein | - |
| ABI116_RS13935 (ABI116_13935) | nucA/comI | 2651949..2652359 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| ABI116_RS13940 (ABI116_13940) | - | 2652555..2652902 (+) | 348 | Protein_2699 | sigma-70 family RNA polymerase sigma factor | - |
| ABI116_RS13945 (ABI116_13945) | spoIVCA | 2652933..2654393 (-) | 1461 | WP_223257626.1 | site-specific DNA recombinase SpoIVCA | - |
| ABI116_RS13950 (ABI116_13950) | - | 2654351..2654529 (-) | 179 | Protein_2701 | hypothetical protein | - |
| ABI116_RS13955 (ABI116_13955) | arsC | 2654884..2655303 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| ABI116_RS13960 (ABI116_13960) | acr3 | 2655315..2656355 (-) | 1041 | WP_004398718.1 | arsenite efflux transporter Acr3 | - |
| ABI116_RS13965 (ABI116_13965) | yqcK | 2656378..2656818 (-) | 441 | WP_003229954.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| ABI116_RS13970 (ABI116_13970) | arsR | 2656879..2657196 (-) | 318 | WP_004399122.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| ABI116_RS13975 (ABI116_13975) | yqcI | 2657568..2658332 (-) | 765 | WP_004398670.1 | YqcI/YcgG family protein | - |
| ABI116_RS13980 (ABI116_13980) | rapE | 2658775..2659902 (+) | 1128 | WP_004398842.1 | response regulator aspartate phosphatase RapE | - |
| ABI116_RS13985 (ABI116_13985) | phrE | 2659892..2660026 (+) | 135 | WP_004398770.1 | phosphatase RapE inhibitor PhrE | - |
| ABI116_RS13990 (ABI116_13990) | - | 2660136..2660294 (+) | 159 | WP_003245945.1 | hypothetical protein | - |
| ABI116_RS13995 (ABI116_13995) | yqcG | 2660664..2662259 (+) | 1596 | WP_004399034.1 | LXG family T7SS effector endonuclease toxin YqcG | - |
| ABI116_RS14000 (ABI116_14000) | yqcF | 2662274..2662852 (+) | 579 | WP_009967790.1 | type VII secretion system immunity protein YqcF | - |
| ABI116_RS14005 (ABI116_14005) | - | 2662970..2663116 (+) | 147 | WP_009967791.1 | hypothetical protein | - |
| ABI116_RS14010 (ABI116_14010) | - | 2663113..2663475 (-) | 363 | WP_003229947.1 | hypothetical protein | - |
| ABI116_RS14015 (ABI116_14015) | - | 2663491..2663970 (-) | 480 | WP_004399085.1 | hypothetical protein | - |
| ABI116_RS14020 (ABI116_14020) | cwlA | 2664135..2664953 (-) | 819 | WP_003229946.1 | N-acetylmuramoyl-L-alanine amidase CwlA | - |
| ABI116_RS14025 (ABI116_14025) | yqxH | 2664998..2665420 (-) | 423 | WP_003246208.1 | holin family protein | - |
| ABI116_RS14030 (ABI116_14030) | yqxG | 2665465..2666358 (-) | 894 | WP_003246010.1 | hypothetical protein | - |
| ABI116_RS14035 (ABI116_14035) | yqcE | 2666446..2666610 (-) | 165 | WP_003229944.1 | XkdX family protein | - |
| ABI116_RS14040 (ABI116_14040) | yqcD | 2666607..2666942 (-) | 336 | WP_009967793.1 | XkdW family protein | - |
| ABI116_RS14045 (ABI116_14045) | yqcC | 2666952..2668052 (-) | 1101 | WP_003229943.1 | pyocin knob domain-containing protein | - |
| ABI116_RS14050 (ABI116_14050) | - | 2668055..2668327 (-) | 273 | WP_003229942.1 | hypothetical protein | - |
| ABI116_RS14055 (ABI116_14055) | yqcA | 2668324..2668902 (-) | 579 | WP_003229941.1 | YmfQ family protein | - |
| ABI116_RS14060 (ABI116_14060) | yqbT | 2668886..2669932 (-) | 1047 | WP_003229940.1 | baseplate J/gp47 family protein | - |
| ABI116_RS14065 (ABI116_14065) | yqbS | 2669925..2670350 (-) | 426 | WP_004398572.1 | DUF2634 domain-containing protein | - |
| ABI116_RS14070 (ABI116_14070) | yqbR | 2670363..2670626 (-) | 264 | WP_003229938.1 | DUF2577 family protein | - |
| ABI116_RS14075 (ABI116_14075) | yqbQ | 2670623..2671603 (-) | 981 | WP_004398524.1 | hypothetical protein | - |
| ABI116_RS14080 (ABI116_14080) | yqbP | 2671616..2672275 (-) | 660 | WP_004398548.1 | LysM peptidoglycan-binding domain-containing protein | - |
| ABI116_RS14085 (ABI116_14085) | yqbO | 2672268..2677025 (-) | 4758 | WP_003246092.1 | phage tail tape measure protein | - |
| ABI116_RS14090 (ABI116_14090) | - | 2677028..2677165 (-) | 138 | WP_003229934.1 | hypothetical protein | - |
| ABI116_RS14095 (ABI116_14095) | - | 2677207..2677656 (-) | 450 | WP_003229933.1 | phage portal protein | - |
| ABI116_RS14100 (ABI116_14100) | txpA | 2677802..2677981 (+) | 180 | WP_004398662.1 | type I toxin-antitoxin system toxin TxpA | - |
| ABI116_RS14105 (ABI116_14105) | bsrH | 2678361..2678450 (+) | 90 | WP_075058862.1 | type I toxin-antitoxin system toxin BsrH | - |
| ABI116_RS14110 (ABI116_14110) | yqbM | 2678704..2679147 (-) | 444 | WP_003229930.1 | phage tail tube protein | - |
| ABI116_RS14115 (ABI116_14115) | yqbK | 2679150..2680550 (-) | 1401 | WP_003229929.1 | phage tail sheath family protein | - |
| ABI116_RS14120 (ABI116_14120) | - | 2680551..2680742 (-) | 192 | WP_010886574.1 | hypothetical protein | - |
| ABI116_RS14125 (ABI116_14125) | yqbJ | 2680739..2681176 (-) | 438 | WP_003229927.1 | DUF6838 family protein | - |
| ABI116_RS14130 (ABI116_14130) | yqbI | 2681189..2681692 (-) | 504 | WP_003246050.1 | HK97 gp10 family phage protein | - |
| ABI116_RS14135 (ABI116_14135) | yqbH | 2681689..2682051 (-) | 363 | WP_003229925.1 | YqbH/XkdH family protein | - |
| ABI116_RS14140 (ABI116_14140) | yqbG | 2682048..2682443 (-) | 396 | WP_004398566.1 | DUF3199 family protein | - |
| ABI116_RS14145 (ABI116_14145) | yqbF | 2682447..2682758 (-) | 312 | WP_003229923.1 | YqbF domain-containing protein | - |
| ABI116_RS14150 (ABI116_14150) | yqbE | 2682769..2683704 (-) | 936 | WP_003229922.1 | phage major capsid protein | - |
| ABI116_RS14155 (ABI116_14155) | yqbD | 2683723..2684691 (-) | 969 | WP_003229921.1 | XkdF-like putative serine protease domain-containing protein | - |
| ABI116_RS14160 (ABI116_14160) | - | 2684724..2685377 (-) | 654 | WP_003229920.1 | hypothetical protein | - |
| ABI116_RS14165 (ABI116_14165) | yqbB | 2685418..2686335 (-) | 918 | WP_004398748.1 | phage head morphogenesis protein | - |
| ABI116_RS14170 (ABI116_14170) | yqbA | 2686332..2687864 (-) | 1533 | WP_004398894.1 | phage portal protein | - |
| ABI116_RS14175 (ABI116_14175) | yqaT | 2687868..2689163 (-) | 1296 | WP_003229917.1 | PBSX family phage terminase large subunit | - |
| ABI116_RS14180 (ABI116_14180) | terS | 2689156..2689875 (-) | 720 | WP_003229916.1 | phage terminase small subunit | - |
| ABI116_RS14185 (ABI116_14185) | - | 2689943..2690407 (-) | 465 | WP_004398685.1 | hypothetical protein | - |
| ABI116_RS14190 (ABI116_14190) | yqaQ | 2690551..2691006 (-) | 456 | WP_004398775.1 | hypothetical protein | - |
| ABI116_RS14195 (ABI116_14195) | - | 2691204..2692133 (+) | 930 | WP_003229913.1 | hypothetical protein | - |
| ABI116_RS14200 (ABI116_14200) | yqaO | 2692207..2692413 (-) | 207 | WP_003229912.1 | XtrA/YqaO family protein | - |
| ABI116_RS14205 (ABI116_14205) | yqaN | 2692495..2692923 (-) | 429 | WP_009967809.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ABI116_RS14210 (ABI116_14210) | - | 2693019..2693168 (-) | 150 | WP_003229910.1 | hypothetical protein | - |
| ABI116_RS14215 (ABI116_14215) | sknM | 2693159..2694100 (-) | 942 | WP_075058863.1 | ATP-binding protein | - |
| ABI116_RS14220 (ABI116_14220) | yqaL | 2693982..2694659 (-) | 678 | WP_010886575.1 | DnaD domain protein | - |
| ABI116_RS14225 (ABI116_14225) | yqaK | 2694735..2695589 (-) | 855 | WP_003229907.1 | recombinase RecT | - |
| ABI116_RS14230 (ABI116_14230) | yqaJ | 2695592..2696551 (-) | 960 | WP_004398673.1 | YqaJ viral recombinase family protein | - |
| ABI116_RS14235 (ABI116_14235) | - | 2696657..2696851 (-) | 195 | WP_003229905.1 | hypothetical protein | - |
| ABI116_RS14240 (ABI116_14240) | - | 2696811..2696984 (-) | 174 | WP_119123069.1 | hypothetical protein | - |
| ABI116_RS14245 (ABI116_14245) | sknH | 2696981..2697238 (-) | 258 | WP_003245994.1 | YqaH family protein | - |
| ABI116_RS14250 (ABI116_14250) | yqaG | 2697235..2697804 (-) | 570 | WP_004398626.1 | helix-turn-helix transcriptional regulator | - |
| ABI116_RS14255 (ABI116_14255) | - | 2697878..2698018 (-) | 141 | WP_003229902.1 | hypothetical protein | - |
| ABI116_RS14260 (ABI116_14260) | yqaF | 2698048..2698278 (-) | 231 | WP_004398958.1 | helix-turn-helix transcriptional regulator | - |
| ABI116_RS14265 (ABI116_14265) | sknR | 2698455..2698805 (+) | 351 | WP_004398704.1 | transcriptional regulator SknR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=1004767 ABI116_RS13935 WP_009967785.1 2651949..2652359(-) (nucA/comI) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=1004767 ABI116_RS13935 WP_009967785.1 2651949..2652359(-) (nucA/comI) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |