Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ABI116_RS12170 Genome accession   NZ_CP157214
Coordinates   2340366..2340986 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS21     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335366..2345986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI116_RS12130 (ABI116_12130) ypqE 2336497..2337003 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  ABI116_RS12135 (ABI116_12135) ypqA 2337141..2337560 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  ABI116_RS12140 (ABI116_12140) yppG 2337581..2337958 (-) 378 WP_004398696.1 YppG family protein -
  ABI116_RS12145 (ABI116_12145) yppF 2338146..2338334 (+) 189 WP_003230690.1 YppF family protein -
  ABI116_RS12150 (ABI116_12150) yppE 2338373..2338744 (-) 372 WP_003246080.1 YppE family protein -
  ABI116_RS12155 (ABI116_12155) yppD 2338790..2339035 (-) 246 WP_004398488.1 YppD family protein -
  ABI116_RS12160 (ABI116_12160) sspM 2339234..2339338 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ABI116_RS12165 (ABI116_12165) yppC 2339363..2340325 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  ABI116_RS12170 (ABI116_12170) recU 2340366..2340986 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ABI116_RS12175 (ABI116_12175) ponA 2341008..2343752 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  ABI116_RS12180 (ABI116_12180) ypoC 2343828..2344322 (-) 495 WP_009967579.1 YpoC family protein -
  ABI116_RS12185 (ABI116_12185) nth 2344319..2344978 (-) 660 WP_009967580.1 endonuclease III -
  ABI116_RS12190 (ABI116_12190) dnaD 2344997..2345695 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1004751 ABI116_RS12170 WP_004399067.1 2340366..2340986(+) (recU) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1004751 ABI116_RS12170 WP_004399067.1 2340366..2340986(+) (recU) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment