Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   ABI424_RS01190 Genome accession   NZ_CP157211
Coordinates   282186..284612 (-) Length   808 a.a.
NCBI ID   WP_041605115.1    Uniprot ID   -
Organism   Histophilus somni strain 23-038383_S91     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 277186..289612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI424_RS01180 (ABI424_000236) rlmKL 278184..280340 (-) 2157 WP_012340636.1 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL -
  ABI424_RS01185 (ABI424_000237) msbA 280386..282134 (-) 1749 WP_041605303.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ABI424_RS01190 (ABI424_000238) rec2 282186..284612 (-) 2427 WP_041605115.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABI424_RS01195 (ABI424_000239) dksA 284911..285348 (+) 438 WP_012340641.1 RNA polymerase-binding protein DksA -
  ABI424_RS01200 (ABI424_000240) pcnB 285650..287023 (+) 1374 WP_012340642.1 polynucleotide adenylyltransferase PcnB -
  ABI424_RS01205 (ABI424_000241) folK 287020..287496 (+) 477 WP_012340643.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABI424_RS01210 (ABI424_000242) nagA 287594..288742 (-) 1149 WP_012340644.1 N-acetylglucosamine-6-phosphate deacetylase -
  ABI424_RS01215 (ABI424_000243) nagB 288755..289561 (-) 807 WP_012340645.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 92377.82 Da        Isoelectric Point: 9.5955

>NTDB_id=1004665 ABI424_RS01190 WP_041605115.1 282186..284612(-) (rec2) [Histophilus somni strain 23-038383_S91]
MKFNLDHYLFVILVSAMTLLITPRIFLLNWQWILILCLVLGLGYIGVKAVFFRCVLKLFFIFVLGLGFFHYQALNLLEQS
EHITRLPKKVQTNVKIAEIIQQKDYQAVIAEGKFTSSLPTQRIYLNWRTEQEVQVGEIWQVNMHIRPISSRLNIGGFDRQ
TWYLAKEITAYATVKSAVKIGEDFSWRATRLNQALQQTSNLVSQGLLLALGFGERAWLDKELWQLYQQTNTAHLIAISGL
HIGLAMFIGFTLGRAIQLLFPTRYIEPYFPLILGIFLAFCYAELAGFSIPTFRAIVALFIVCLCRICRVSYSVWQLFLRV
ICVLLILNPFMLLSASFWLSIGAVGCLIMWYQWIPLNLFLWKEKPLAQSSLKKVRYFIGLFHLQFGLLWFFTPIQLLIFN
GIALNGFWANLLLLPLFSFLLVPLILFAVLTEGALNSWNIADQLAIWINQLLKLLPNQWINISLAESYFISAILALLFTL
CCKWIIKCSTDDDLSLLRKVRKKSFYPIRLNFSDGFSHKKYQYGMVVSSAMFVIFLCLWFFSLYEQGRLKNTQWQFDTLD
VGQGLASLLVKNQHGILYDTGASWKNGSMAKIEIIPYLRRQGIILDKVILSHDDNDHAGGVKDIFQAYPNAEFISPSLKK
YENSPENRPHIACQKGKIWHWQGLYIEALSPSKIVMRANNPDSCVLIISDGQHKVLLTGDADVATEYKILSDLGKIDVLQ
VGHHGSKTSTGEKLLQHIQPKIALISSGRWNPWGFPHQDVVKRLNAVESAVYNTAISGQIRLTFKGKDIQIQTARTEFSP
WYRGLIGL

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=1004665 ABI424_RS01190 WP_041605115.1 282186..284612(-) (rec2) [Histophilus somni strain 23-038383_S91]
ATGAAATTCAACCTTGATCATTACCTTTTTGTTATTTTAGTGAGTGCAATGACATTGCTAATTACGCCTCGTATTTTTTT
ATTGAATTGGCAATGGATATTGATCTTATGTCTTGTTCTTGGGTTAGGATATATTGGTGTTAAAGCAGTATTTTTTCGCT
GTGTTCTAAAGCTATTTTTCATTTTTGTTCTTGGGTTGGGATTTTTTCATTATCAAGCATTAAACTTGTTGGAACAAAGT
GAGCATATTACCCGCTTACCTAAAAAAGTACAAACTAACGTTAAAATAGCTGAAATTATTCAGCAGAAAGACTATCAAGC
AGTGATCGCAGAAGGAAAATTCACCTCATCTTTGCCAACACAGCGAATTTATTTAAATTGGCGTACTGAGCAAGAGGTTC
AAGTTGGTGAAATTTGGCAAGTAAATATGCACATTCGTCCGATTTCTTCTCGATTAAATATAGGAGGATTTGATCGTCAA
ACCTGGTATTTAGCAAAAGAAATTACAGCTTATGCCACAGTAAAAAGTGCGGTGAAAATTGGTGAGGATTTTTCTTGGCG
AGCTACTCGACTGAATCAAGCTTTACAACAAACTTCCAATTTAGTTTCACAAGGTTTATTGCTTGCATTGGGTTTTGGTG
AAAGAGCATGGTTAGACAAGGAATTATGGCAACTTTATCAACAAACCAATACCGCACATTTAATTGCAATTTCAGGGTTG
CATATTGGTTTAGCTATGTTCATCGGTTTTACATTAGGGCGAGCTATTCAATTATTATTCCCTACTCGTTATATTGAACC
TTATTTTCCTTTAATATTAGGGATTTTTTTAGCATTCTGTTATGCAGAATTAGCGGGATTTTCAATTCCTACTTTTCGTG
CGATTGTCGCTTTATTTATAGTTTGTTTGTGTCGTATATGTCGAGTTTCCTATAGTGTTTGGCAACTATTTTTGCGGGTT
ATTTGTGTTTTACTGATACTTAATCCATTTATGTTATTGTCAGCCAGTTTTTGGCTATCAATCGGAGCGGTAGGTTGTTT
GATCATGTGGTATCAATGGATACCGCTAAATTTATTTTTATGGAAAGAAAAGCCTTTGGCACAATCTTCCTTGAAAAAAG
TGCGGTATTTTATCGGTCTTTTTCATTTGCAATTTGGGCTTTTGTGGTTTTTTACACCTATCCAACTCTTAATTTTTAAT
GGTATCGCCTTAAATGGATTTTGGGCTAATTTATTATTGTTGCCTTTGTTCAGTTTTTTGTTAGTTCCACTTATTCTTTT
TGCTGTACTGACGGAAGGTGCGTTAAATAGCTGGAATATAGCTGATCAGCTTGCTATATGGATCAATCAATTGTTAAAGC
TGTTACCAAATCAGTGGATCAATATTTCTCTTGCAGAAAGCTATTTTATTTCAGCTATATTAGCTTTGCTCTTCACCTTA
TGCTGTAAATGGATTATTAAGTGTTCAACCGACGATGATTTATCTTTATTGAGAAAAGTTAGAAAAAAAAGTTTTTACCC
TATACGGTTGAATTTTTCGGACGGTTTTTCACATAAAAAATATCAATATGGTATGGTGGTCAGTTCAGCTATGTTTGTTA
TTTTTTTATGTCTGTGGTTTTTTTCGCTATATGAACAAGGGCGATTAAAAAACACACAATGGCAATTTGATACTCTAGAT
GTTGGTCAAGGATTGGCAAGTTTATTGGTAAAAAATCAACATGGAATTTTGTATGATACGGGAGCAAGCTGGAAAAATGG
TAGTATGGCAAAAATTGAGATTATTCCTTATCTAAGAAGACAGGGTATTATTCTTGATAAAGTTATATTAAGTCATGATG
ATAATGATCATGCAGGTGGAGTAAAAGATATTTTCCAAGCTTATCCGAATGCTGAGTTTATTAGTCCCTCATTAAAAAAG
TACGAGAATTCTCCAGAAAATAGACCGCATATTGCTTGTCAAAAAGGAAAAATATGGCATTGGCAAGGGTTATATATTGA
AGCTTTATCGCCAAGTAAAATTGTGATGAGAGCCAATAATCCGGATTCTTGTGTGCTGATAATTTCAGATGGACAGCATA
AAGTACTATTAACAGGAGATGCTGATGTGGCGACTGAATATAAAATTTTGTCTGACTTGGGTAAGATTGATGTGTTACAG
GTCGGACATCATGGTAGTAAAACGTCAACCGGTGAGAAATTACTACAGCATATTCAGCCTAAAATTGCTTTAATTTCCAG
TGGACGTTGGAATCCGTGGGGATTTCCGCATCAAGATGTCGTCAAACGCTTAAATGCGGTTGAAAGTGCGGTCTATAATA
CGGCCATTTCCGGCCAAATCCGTTTAACATTTAAAGGAAAAGATATTCAAATTCAAACCGCAAGGACAGAGTTTAGCCCT
TGGTATAGAGGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-177)

Metallo-beta-lactamase superfamily (Lactamase_B)

(560-747)

Competence protein (Competence)

(210-484)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.485

100

0.515

Multiple sequence alignment