Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ABI122_RS20020 Genome accession   NZ_CP157205
Coordinates   3934632..3935090 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain 9.1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3929632..3940090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI122_RS20005 (ABI122_20005) - 3930301..3930537 (+) 237 WP_000283738.1 hypothetical protein -
  ABI122_RS20010 (ABI122_20010) - 3930699..3932807 (-) 2109 WP_130055427.1 polyphosphate kinase -
  ABI122_RS20015 (ABI122_20015) ppx 3932916..3934490 (-) 1575 WP_053083189.1 exopolyphosphatase -
  ABI122_RS20020 (ABI122_20020) kre 3934632..3935090 (+) 459 WP_000804864.1 YkyB family protein Regulator
  ABI122_RS20025 (ABI122_20025) - 3935122..3935784 (-) 663 WP_071740158.1 YkyA family protein -
  ABI122_RS20030 (ABI122_20030) - 3936399..3937052 (-) 654 WP_000680811.1 diguanylate cyclase -
  ABI122_RS20035 (ABI122_20035) - 3937217..3937450 (+) 234 WP_000939448.1 SPP1 phage holin family protein -
  ABI122_RS20040 (ABI122_20040) - 3937482..3937982 (-) 501 WP_000708120.1 hypothetical protein -
  ABI122_RS20045 (ABI122_20045) - 3938395..3939936 (+) 1542 WP_000449912.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=1004643 ABI122_RS20020 WP_000804864.1 3934632..3935090(+) (kre) [Bacillus thuringiensis strain 9.1]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=1004643 ABI122_RS20020 WP_000804864.1 3934632..3935090(+) (kre) [Bacillus thuringiensis strain 9.1]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTGCATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTAAAAC
AAGAAAAAAAATTAAGTGAGCCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment