Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   FGK83_RS08950 Genome accession   NZ_LR590465
Coordinates   1814278..1815498 (-) Length   406 a.a.
NCBI ID   WP_138172156.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8468     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1809278..1820498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK83_RS08930 (NCTC8468_01799) - 1809316..1810203 (-) 888 WP_021034856.1 ABC transporter permease subunit -
  FGK83_RS08935 (NCTC8468_01800) - 1810193..1811158 (-) 966 WP_050948615.1 ABC transporter permease -
  FGK83_RS08940 (NCTC8468_01801) - 1811158..1812857 (-) 1700 Protein_1708 ABC transporter substrate-binding protein -
  FGK83_RS08945 (NCTC8468_01802) - 1812894..1814281 (+) 1388 Protein_1709 YcjX family protein -
  FGK83_RS08950 (NCTC8468_01804) kpsS 1814278..1815498 (-) 1221 WP_138172156.1 capsule biosynthesis protein Regulator
  FGK83_RS08955 (NCTC8468_01805) - 1815551..1817593 (-) 2043 WP_138172157.1 capsular polysaccharide biosynthesis protein -
  FGK83_RS08960 (NCTC8468_01806) - 1817700..1819547 (-) 1848 WP_015702013.1 capsular polysaccharide synthesis protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 47192.27 Da        Isoelectric Point: 9.5322

>NTDB_id=1004596 FGK83_RS08950 WP_138172156.1 1814278..1815498(-) (kpsS) [Haemophilus influenzae strain NCTC8468]
MNHYLDELVQSSKRILLLQGPIGHFFTDLSAWLVGQGKTVYKINFNGGDEHFYPSSIENTIAYRGSVSEFYPYLQLFCKQ
HNIDAMVCFGDNRRYHKIAKKISQDEQIPFWVFEEGYFRPDYVTLEKQGVNAFSPLPRQADFYLEQAENLPEPAIPLKLA
KGFLPMAKVAIAYYTKVYFGRDNYPKYQHHRILNLKYYIKLWVTSGIKRAYYYLHDRTFARKVNCGKLGNFFVVPLQVYD
DSQVKVHCDFNSIGAFLREVLQSFAESAPNNLNLVIKHHPMDRGFIHYDPVIQEFENRYPHLKGRLFYVHDVPLPVLLRH
GKGMVTLNSTSGISALLRGMPVITLGRANYHFEGLTHQGDLASFWQNPTKPDMPVFKAYRKYHLNKTMINGSFYNRVILP
LHPDKN

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1004596 FGK83_RS08950 WP_138172156.1 1814278..1815498(-) (kpsS) [Haemophilus influenzae strain NCTC8468]
ATGAACCACTATTTAGATGAATTAGTCCAAAGTTCGAAACGGATTTTACTTTTGCAAGGACCAATCGGCCACTTTTTTAC
CGATCTTTCAGCTTGGTTAGTGGGACAAGGAAAAACCGTTTATAAAATCAATTTTAACGGTGGCGATGAACATTTTTATC
CGTCATCGATTGAAAACACGATTGCTTATCGTGGCTCAGTGAGTGAGTTCTACCCTTACCTGCAACTATTTTGCAAACAA
CACAATATTGATGCGATGGTTTGCTTTGGTGACAACCGTAGATACCACAAAATCGCAAAAAAAATATCACAAGATGAACA
GATTCCATTTTGGGTGTTTGAAGAAGGCTATTTCCGTCCTGATTACGTGACACTCGAAAAACAAGGGGTAAATGCGTTCT
CCCCTCTTCCTCGCCAAGCAGATTTCTATCTTGAGCAAGCCGAAAATTTACCTGAGCCAGCTATACCACTTAAATTAGCC
AAAGGTTTTTTACCGATGGCAAAAGTGGCAATCGCTTATTACACTAAAGTTTACTTTGGGCGAGATAATTACCCGAAATA
CCAACACCACCGCATTCTGAATCTGAAATACTATATAAAACTATGGGTTACATCAGGCATCAAGCGTGCTTATTATTACT
TGCATGATCGTACCTTTGCAAGAAAAGTCAACTGTGGGAAATTAGGTAATTTCTTTGTTGTGCCATTGCAAGTTTATGAT
GACAGCCAAGTGAAAGTACATTGTGATTTCAACAGTATAGGCGCATTCTTGCGTGAAGTATTGCAATCTTTTGCTGAATC
AGCACCAAACAATCTCAATCTAGTCATTAAGCATCACCCAATGGATCGGGGTTTTATTCATTATGATCCAGTTATTCAAG
AATTTGAAAACCGTTATCCGCACTTAAAAGGGCGACTATTCTATGTGCATGATGTGCCATTGCCTGTTCTACTTCGCCAT
GGAAAAGGCATGGTAACATTAAACAGTACGAGTGGTATTTCAGCCTTATTACGTGGAATGCCCGTTATTACGCTTGGGCG
TGCTAATTATCATTTTGAAGGTCTTACACACCAAGGGGATTTGGCTTCATTTTGGCAAAATCCAACCAAGCCTGATATGC
CTGTATTTAAGGCTTACCGCAAATATCATCTGAATAAAACCATGATTAATGGTAGTTTTTATAATCGAGTGATCCTTCCC
TTACATCCGGATAAAAATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(84-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.52

96.552

0.372