Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABGB03_RS15180 Genome accession   NZ_CP157199
Coordinates   3306109..3307467 (+) Length   452 a.a.
NCBI ID   WP_347923556.1    Uniprot ID   A0AAU7BSA2
Organism   Pontimicrobium sp. SW4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3301109..3312467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGB03_RS15155 (ABGB03_15155) - 3301756..3302565 (-) 810 WP_347923548.1 glycogen/starch synthase -
  ABGB03_RS15160 (ABGB03_15160) panC 3302671..3303522 (+) 852 WP_347923550.1 pantoate--beta-alanine ligase -
  ABGB03_RS15165 (ABGB03_15165) panD 3303536..3303886 (+) 351 WP_347923551.1 aspartate 1-decarboxylase -
  ABGB03_RS15170 (ABGB03_15170) - 3303890..3304840 (+) 951 WP_347923553.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  ABGB03_RS15175 (ABGB03_15175) - 3304960..3306108 (+) 1149 WP_347923555.1 alpha/beta hydrolase-fold protein -
  ABGB03_RS15180 (ABGB03_15180) radA 3306109..3307467 (+) 1359 WP_347923556.1 DNA repair protein RadA Machinery gene
  ABGB03_RS15185 (ABGB03_15185) ileS 3307539..3310943 (+) 3405 WP_347923558.1 isoleucine--tRNA ligase -
  ABGB03_RS15190 (ABGB03_15190) - 3310948..3311328 (+) 381 WP_347923560.1 TraR/DksA C4-type zinc finger protein -
  ABGB03_RS15195 (ABGB03_15195) - 3311430..3312062 (+) 633 WP_347923562.1 lipoprotein signal peptidase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49823.20 Da        Isoelectric Point: 6.1893

>NTDB_id=1004566 ABGB03_RS15180 WP_347923556.1 3306109..3307467(+) (radA) [Pontimicrobium sp. SW4]
MVKVKTTYFCQNCGNQFSKWQGQCSACKEWNTIAEEVIQKPEKSDWKSPLNSSKRVSKPLLINEIDTSQEARIQTSDAEF
NRVFGGGIVPGSLTLLGGEPGIGKSTLLLQIALKLPYKTLYVSGEESQKQIKMRAERINPNSSNCYILTETKTQNIFKQI
EALEPDIVVVDSIQTLHSDYIESSSGSISQIKECTTELIKFAKETATPVVLIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVFRILRANKNRFGSTNELGIYEMQGSGLREVSNPSEILISKKDEELSGNAIAATLEGMRPLMIEVQALVSTAVYGTP
QRSATGFNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGITVDDPAIDLAVVAAILSSNEDEALQKDFCFAAEVGLSGEI
RPVQRVEQRVLEAEKLGFSTIFVSKYNKISLKNTAIKIQLISKIEDLVEFIV

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=1004566 ABGB03_RS15180 WP_347923556.1 3306109..3307467(+) (radA) [Pontimicrobium sp. SW4]
ATGGTAAAAGTAAAAACGACATATTTCTGCCAAAATTGTGGCAATCAGTTTTCAAAATGGCAAGGACAATGTTCTGCATG
TAAAGAGTGGAATACTATAGCGGAGGAAGTGATTCAAAAACCTGAAAAAAGCGATTGGAAATCACCTTTAAATTCGTCAA
AGCGAGTATCGAAACCATTATTAATAAATGAAATTGATACATCACAAGAAGCTCGAATTCAAACTAGTGATGCAGAATTT
AATCGTGTGTTTGGAGGTGGCATTGTCCCAGGATCCTTAACACTTTTAGGAGGCGAACCAGGAATTGGAAAAAGTACCTT
ATTGCTTCAAATAGCCTTAAAATTACCTTATAAAACCTTATATGTTTCAGGTGAAGAAAGCCAGAAGCAAATTAAAATGC
GAGCTGAACGCATTAATCCTAACAGTAGTAATTGCTACATTCTTACTGAAACAAAGACACAAAATATTTTCAAGCAAATA
GAAGCTTTAGAGCCAGATATTGTGGTAGTTGATTCCATTCAAACACTACATAGTGATTATATTGAATCGTCTTCAGGTAG
TATTTCTCAAATAAAAGAATGCACCACGGAGCTTATAAAATTTGCTAAGGAAACTGCAACTCCAGTTGTACTTATTGGTC
ATATAACAAAGGATGGAAACATCGCAGGACCAAAAATACTGGAACACATGGTGGATACGGTTTTGCAATTTGAAGGCGAT
AGAAATCATGTATTTAGAATTTTAAGAGCCAACAAAAACCGTTTTGGATCCACCAACGAACTTGGTATTTACGAAATGCA
AGGTTCAGGCTTGCGAGAAGTATCAAACCCATCCGAGATACTTATTTCTAAAAAAGACGAAGAATTATCAGGGAATGCGA
TTGCAGCAACCTTAGAAGGTATGCGACCATTAATGATAGAAGTCCAAGCTTTAGTAAGTACTGCAGTTTATGGCACACCG
CAGCGCTCTGCAACAGGCTTTAATGCCAAACGCTTAAATATGCTTTTAGCTGTTTTAGAAAAACGAGCTGGTTTTAGATT
AGGTGCAAAAGACGTATTTTTAAATATTACGGGAGGCATTACGGTTGATGACCCAGCAATAGATTTAGCTGTAGTTGCAG
CTATTTTATCTTCTAATGAAGATGAAGCGTTGCAAAAAGACTTTTGTTTTGCGGCTGAGGTTGGACTATCTGGAGAAATT
CGCCCTGTACAGCGTGTTGAGCAACGTGTTCTAGAGGCAGAAAAGCTAGGTTTCTCTACCATTTTTGTGTCTAAATACAA
TAAGATTTCATTAAAAAACACAGCTATTAAAATTCAACTTATTTCAAAGATTGAGGATTTGGTAGAGTTTATCGTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(327-427)

AAA domain (AAA_25)

(66-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.465

95.133

0.48
  radA Streptococcus mitis SK321

48.081

98.009

0.471
  radA Streptococcus pneumoniae Rx1

48.946

94.469

0.462
  radA Streptococcus pneumoniae D39

48.946

94.469

0.462
  radA Streptococcus pneumoniae R6

48.946

94.469

0.462
  radA Streptococcus pneumoniae TIGR4

48.946

94.469

0.462
  radA Streptococcus mitis NCTC 12261

48.946

94.469

0.462

Multiple sequence alignment