Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FGK83_RS03370 Genome accession   NZ_LR590465
Coordinates   672608..673210 (+) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain NCTC8468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 667608..678210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK83_RS03355 (NCTC8468_00663) - 668455..671055 (+) 2601 WP_138171622.1 penicillin-binding protein 1A -
  FGK83_RS03360 (NCTC8468_00664) - 671132..671977 (+) 846 WP_138171624.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  FGK83_RS03365 (NCTC8468_00665) - 672146..672475 (+) 330 WP_032826791.1 YbaB/EbfC family nucleoid-associated protein -
  FGK83_RS03370 (NCTC8468_00666) recR 672608..673210 (+) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  FGK83_RS03375 (NCTC8468_00667) - 673226..675181 (+) 1956 WP_138171626.1 DNA topoisomerase III -
  FGK83_RS03380 (NCTC8468_00668) secG 675290..675631 (+) 342 WP_138171627.1 preprotein translocase subunit SecG -
  FGK83_RS03390 (NCTC8468_00670) - 675929..676471 (+) 543 WP_232043354.1 integrase arm-type DNA-binding domain-containing protein -
  FGK83_RS03395 (NCTC8468_00671) - 676686..676907 (-) 222 WP_006996233.1 sulfurtransferase TusA family protein -
  FGK83_RS03400 (NCTC8468_00672) - 676904..677422 (-) 519 WP_138172187.1 hemerythrin domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=1004566 FGK83_RS03370 WP_005626527.1 672608..673210(+) (recR) [Haemophilus influenzae strain NCTC8468]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1004566 FGK83_RS03370 WP_005626527.1 672608..673210(+) (recR) [Haemophilus influenzae strain NCTC8468]
ATGCAAAGCAGTCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCCATGTCTAAAA
TTGGTCATTGCTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACACTTGTCTCCACTTGATGGCATTGGACCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGTTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACGGTGGAAGGCGATGCGACGGCAAACTACATCGCTGAAATG
TGCCGCCAACACAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGTGGGGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment