Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   E0F34_RS11940 Genome accession   NZ_LR536843
Coordinates   1260461..1261183 (-) Length   240 a.a.
NCBI ID   WP_050201235.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255461..1266183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F34_RS06880 - 1257786..1257911 (-) 126 Protein_1303 IS30 family transposase -
  E0F34_RS06885 (SAMEA104035599_01303) - 1258036..1259202 (-) 1167 WP_024477840.1 MalY/PatB family protein -
  E0F34_RS06890 (SAMEA104035599_01304) - 1259210..1260304 (-) 1095 WP_061649952.1 cystathionine gamma-synthase -
  E0F34_RS11940 (SAMEA104035599_01305) rcrP 1260461..1261183 (-) 723 WP_050201235.1 ABC transporter ATP-binding protein Regulator
  E0F34_RS11945 (SAMEA104035599_01306) - 1261187..1262143 (-) 957 WP_024477842.1 ABC transporter ATP-binding protein -
  E0F34_RS06900 (SAMEA104035599_01307) amiA 1262315..1264273 (-) 1959 WP_000748881.1 peptide ABC transporter substrate-binding protein Regulator
  E0F34_RS06910 (SAMEA104035599_01308) - 1264477..1266099 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27102.89 Da        Isoelectric Point: 4.9157

>NTDB_id=1004532 E0F34_RS11940 WP_050201235.1 1260461..1261183(-) (rcrP) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1004532 E0F34_RS11940 WP_050201235.1 1260461..1261183(-) (rcrP) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.82

99.583

0.367
  rcrQ Streptococcus mutans UA159

36.25

100

0.363
  comA Streptococcus mitis SK321

37.179

97.5

0.362