Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   E0F34_RS09035 Genome accession   NZ_LR536843
Coordinates   1665055..1665519 (-) Length   154 a.a.
NCBI ID   WP_061650005.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1660055..1670519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F34_RS09015 (SAMEA104035599_01713) - 1661006..1661974 (-) 969 WP_000105371.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  E0F34_RS09020 (SAMEA104035599_01714) pdrM 1662128..1663489 (-) 1362 WP_044813752.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  E0F34_RS09025 (SAMEA104035599_01715) - 1663500..1663760 (-) 261 WP_001105925.1 hypothetical protein -
  E0F34_RS09030 (SAMEA104035599_01716) - 1663774..1665042 (-) 1269 WP_000924508.1 dihydroorotase -
  E0F34_RS09035 (SAMEA104035599_01717) mutX 1665055..1665519 (-) 465 WP_061650005.1 NUDIX hydrolase Machinery gene
  E0F34_RS09040 (SAMEA104035599_01718) - 1665529..1666182 (-) 654 WP_000401326.1 uracil-DNA glycosylase -
  E0F34_RS09045 (SAMEA104035599_01719) - 1666318..1666965 (-) 648 WP_075218829.1 hypothetical protein -
  E0F34_RS09050 (SAMEA104035599_01720) - 1666979..1667692 (-) 714 WP_050111435.1 YjjG family noncanonical pyrimidine nucleotidase -
  E0F34_RS09055 (SAMEA104035599_01721) - 1668101..1668319 (-) 219 Protein_1701 PTS mannose family transporter subunit IIA -
  E0F34_RS12285 - 1668319..1668393 (-) 75 Protein_1702 dihydroxyacetone kinase subunit L -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17802.12 Da        Isoelectric Point: 4.2287

>NTDB_id=1004493 E0F34_RS09035 WP_061650005.1 1665055..1665519(-) (mutX) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAAREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGTLEWVSYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1004493 E0F34_RS09035 WP_061650005.1 1665055..1665519(-) (mutX) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGGCGCGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGGTTTC
CTATGACGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCTAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.052

100

0.981