Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   E0F34_RS08650 Genome accession   NZ_LR536843
Coordinates   1587033..1587743 (+) Length   236 a.a.
NCBI ID   WP_061649987.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1582033..1592743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F34_RS08630 (SAMEA104035599_01638) - 1582574..1582822 (-) 249 WP_000364990.1 YneF family protein -
  E0F34_RS08635 (SAMEA104035599_01639) treC 1583078..1584703 (-) 1626 WP_000171212.1 alpha,alpha-phosphotrehalase -
  E0F34_RS08645 (SAMEA104035599_01640) treP 1584881..1586848 (-) 1968 WP_061649986.1 PTS system trehalose-specific EIIBC component -
  E0F34_RS08650 (SAMEA104035599_01641) treR 1587033..1587743 (+) 711 WP_061649987.1 trehalose operon repressor Regulator
  E0F34_RS08655 - 1587917..1589225 (+) 1309 Protein_1635 transposase -
  E0F34_RS08660 (SAMEA104035599_01645) rpsA 1589310..1590512 (-) 1203 WP_001001623.1 30S ribosomal protein S1 -
  E0F34_RS08675 (SAMEA104035599_01648) - 1590885..1591115 (-) 231 WP_000037113.1 DUF2969 domain-containing protein -
  E0F34_RS08680 (SAMEA104035599_01649) pcp 1591283..1591927 (-) 645 WP_024478202.1 pyroglutamyl-peptidase I -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27635.79 Da        Isoelectric Point: 8.9758

>NTDB_id=1004484 E0F34_RS08650 WP_061649987.1 1587033..1587743(+) (treR) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRRALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1004484 E0F34_RS08650 WP_061649987.1 1587033..1587743(+) (treR) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAGGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

58.898

100

0.589