Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   E0F34_RS08565 Genome accession   NZ_LR536843
Coordinates   1572712..1573671 (+) Length   319 a.a.
NCBI ID   WP_000777248.1    Uniprot ID   A0A0H2ZMI3
Organism   Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1567712..1578671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F34_RS08530 (SAMEA104035599_01620) - 1567912..1568676 (-) 765 WP_000082876.1 nuclear transport factor 2 family protein -
  E0F34_RS08535 (SAMEA104035599_01621) - 1568680..1569123 (-) 444 WP_000651443.1 MarR family winged helix-turn-helix transcriptional regulator -
  E0F34_RS08540 (SAMEA104035599_01622) - 1569805..1570101 (-) 297 WP_000840137.1 bacteriocin immunity protein -
  E0F34_RS08545 (SAMEA104035599_01623) pepA 1570123..1571187 (-) 1065 WP_000209199.1 glutamyl aminopeptidase -
  E0F34_RS08555 (SAMEA104035599_01624) - 1571588..1572289 (+) 702 WP_025173631.1 NAD-dependent epimerase/dehydratase family protein -
  E0F34_RS12275 - 1572305..1572415 (+) 111 WP_001108391.1 hypothetical protein -
  E0F34_RS08565 (SAMEA104035599_01625) ceuB 1572712..1573671 (+) 960 WP_000777248.1 ABC transporter permease Machinery gene
  E0F34_RS08570 (SAMEA104035599_01626) - 1573661..1574617 (+) 957 WP_001866679.1 iron chelate uptake ABC transporter family permease subunit -
  E0F34_RS08575 (SAMEA104035599_01627) - 1574614..1575366 (+) 753 WP_000764304.1 ABC transporter ATP-binding protein -
  E0F34_RS08580 (SAMEA104035599_01628) - 1575462..1576427 (+) 966 WP_000858246.1 siderophore ABC transporter substrate-binding protein -
  E0F34_RS08585 (SAMEA104035599_01629) yidD 1576652..1576894 (-) 243 WP_000821614.1 membrane protein insertion efficiency factor YidD -
  E0F34_RS08590 (SAMEA104035599_01630) - 1576894..1577616 (-) 723 WP_001222228.1 pseudouridine synthase -
  E0F34_RS08595 (SAMEA104035599_01631) scpB 1577603..1578172 (-) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35418.29 Da        Isoelectric Point: 9.7465

>NTDB_id=1004483 E0F34_RS08565 WP_000777248.1 1572712..1573671(+) (ceuB) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFVSSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=1004483 E0F34_RS08565 WP_000777248.1 1572712..1573671(+) (ceuB) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGAATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTGTTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTGCCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCCTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTACTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZMI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.419

97.179

0.364