Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   E0F34_RS02945 Genome accession   NZ_LR536843
Coordinates   538358..538624 (+) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 533358..543624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F34_RS02925 (SAMEA104035599_00559) - 533573..534082 (+) 510 WP_000619943.1 GNAT family N-acetyltransferase -
  E0F34_RS02930 (SAMEA104035599_00560) pheT 534159..536561 (+) 2403 WP_061649912.1 phenylalanine--tRNA ligase subunit beta -
  E0F34_RS02935 (SAMEA104035599_00561) - 536629..537630 (-) 1002 WP_050086924.1 endonuclease/exonuclease/phosphatase family protein -
  E0F34_RS02940 (SAMEA104035599_00562) - 537786..538274 (+) 489 Protein_558 transposase -
  E0F34_RS02945 (SAMEA104035599_00563) HI0659 538358..538624 (+) 267 WP_001808618.1 helix-turn-helix domain-containing protein Machinery gene
  E0F34_RS02950 (SAMEA104035599_00564) metE 538885..541134 (+) 2250 WP_061649913.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  E0F34_RS02955 (SAMEA104035599_00565) metF 541198..542064 (+) 867 WP_000089976.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=1004445 E0F34_RS02945 WP_001808618.1 538358..538624(+) (HI0659) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=1004445 E0F34_RS02945 WP_001808618.1 538358..538624(+) (HI0659) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534