Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   E0F34_RS00210 Genome accession   NZ_LR536843
Coordinates   34501..35271 (+) Length   256 a.a.
NCBI ID   WP_000616162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 29501..40271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F34_RS00190 (SAMEA104035599_00035) - 31376..31813 (+) 438 WP_000076485.1 CoA-binding protein -
  E0F34_RS11655 (SAMEA104035599_00036) - 31854..32147 (+) 294 WP_050257889.1 hypothetical protein -
  E0F34_RS00200 (SAMEA104035599_00037) - 32176..33186 (-) 1011 WP_061643240.1 YeiH family protein -
  E0F34_RS00205 (SAMEA104035599_00038) - 33335..34504 (+) 1170 WP_000366345.1 pyridoxal phosphate-dependent aminotransferase -
  E0F34_RS00210 (SAMEA104035599_00039) recO 34501..35271 (+) 771 WP_000616162.1 DNA repair protein RecO Machinery gene
  E0F34_RS00215 (SAMEA104035599_00040) plsX 35268..36260 (+) 993 WP_050114046.1 phosphate acyltransferase PlsX -
  E0F34_RS00220 (SAMEA104035599_00041) - 36266..36499 (+) 234 WP_000136447.1 acyl carrier protein -
  E0F34_RS00225 (SAMEA104035599_00042) - 36536..36835 (+) 300 Protein_40 transposase family protein -
  E0F34_RS00230 (SAMEA104035599_00043) blpU 37038..37268 (+) 231 WP_001093069.1 bacteriocin-like peptide BlpU -
  E0F34_RS12090 (SAMEA104035599_00044) - 37271..37396 (+) 126 WP_001842754.1 PncF family bacteriocin immunity protein -
  E0F34_RS00235 (SAMEA104035599_00045) comA 37985..40138 (+) 2154 WP_000668280.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.3615

>NTDB_id=1004424 E0F34_RS00210 WP_000616162.1 34501..35271(+) (recO) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1004424 E0F34_RS00210 WP_000616162.1 34501..35271(+) (recO) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGATAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.609

100

0.996