Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   E4Z82_RS25080 Genome accession   NZ_LR536431
Coordinates   5051533..5052525 (-) Length   330 a.a.
NCBI ID   WP_000224475.1    Uniprot ID   -
Organism   Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5046533..5057525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z82_RS25070 yieP 5049425..5050117 (+) 693 WP_001131165.1 FadR/GntR family transcriptional regulator -
  E4Z82_RS25075 mdtD 5050140..5051567 (+) 1428 WP_001280838.1 multidrug transporter subunit MdtD -
  E4Z82_RS25080 cytR 5051533..5052525 (-) 993 WP_000224475.1 ribose operon transcriptional repressor RbsR Regulator
  E4Z82_RS25085 rbsK 5052529..5053458 (-) 930 WP_024174564.1 ribokinase -
  E4Z82_RS25090 rbsB 5053584..5054474 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  E4Z82_RS25095 rbsC 5054499..5055464 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  E4Z82_RS25100 rbsA 5055469..5056974 (-) 1506 WP_000387771.1 ribose ABC transporter ATP-binding protein RbsA -
  E4Z82_RS25105 rbsD 5056982..5057401 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36641.93 Da        Isoelectric Point: 5.2141

>NTDB_id=1004416 E4Z82_RS25080 WP_000224475.1 5051533..5052525(-) (cytR) [Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNSGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1004416 E4Z82_RS25080 WP_000224475.1 5051533..5052525(-) (cytR) [Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGTTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACAGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

39.088

93.03

0.364