Detailed information NTG1004408

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: E4Z82_RS24175
• Genome accession: NZ_LR536431
• Coordinates: 4870203..4871228 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4865203..4876228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4Z82_RS24160	-	4865496..4867274 (-)	1779	WP_134440080.1	RHS repeat-associated core domain-containing protein	-
E4Z82_RS24165	rpmE	4867434..4867646 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
E4Z82_RS24170	priA	4867849..4870047 (+)	2199	WP_001446287.1	primosomal protein N'	Machinery gene
E4Z82_RS24175	cytR	4870203..4871228 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
E4Z82_RS24180	ftsN	4871320..4872279 (+)	960	WP_000068834.1	cell division protein FtsN	-
E4Z82_RS24185	hslV	4872371..4872901 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
E4Z82_RS24190	hslU	4872911..4874242 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
E4Z82_RS24195	menA	4874309..4875235 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
E4Z82_RS24200	rraA	4875328..4875813 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
E4Z82_RS24205	zapB	4875898..4876143 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=1004408 E4Z82_RS24175 WP_000644904.1 4870203..4871228(+) (cytR) [Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1004408 E4Z82_RS24175 WP_000644904.1 4870203..4871228(+) (cytR) [Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628