Detailed information NTG1004354

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E4Z82_RS05435
• Genome accession: NZ_LR536431
• Coordinates: 1100967..1101959 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1095967..1106959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4Z82_RS05405	ispD	1096028..1096738 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
E4Z82_RS05410	ispF	1096738..1097217 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E4Z82_RS05415	truD	1097214..1098263 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
E4Z82_RS05420	surE	1098244..1099005 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
E4Z82_RS05425	pcm	1098999..1099625 (+)	627	WP_000254707.1	protein-L-isoaspartate O-methyltransferase	-
E4Z82_RS05430	nlpD	1099810..1100904 (+)	1095	WP_310984266.1	murein hydrolase activator NlpD	-
E4Z82_RS05435	rpoS	1100967..1101959 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
E4Z82_RS05440	-	1102080..1102487 (-)	408	WP_001208074.1	MarR family transcriptional regulator	-
E4Z82_RS05445	-	1102634..1103227 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
E4Z82_RS05450	-	1103227..1104654 (+)	1428	WP_000863214.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
E4Z82_RS05455	-	1104665..1104901 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
E4Z82_RS05460	ygbN	1104941..1106305 (-)	1365	WP_000104441.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1004354 E4Z82_RS05435 WP_000081550.1 1100967..1101959(+) (rpoS) [Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1004354 E4Z82_RS05435 WP_000081550.1 1100967..1101959(+) (rpoS) [Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715