Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   E4Z69_RS13905 Genome accession   NZ_LR536430
Coordinates   2763113..2764138 (-) Length   341 a.a.
NCBI ID   WP_000644903.1    Uniprot ID   -
Organism   Escherichia coli isolate f974b26a-5e81-11e8-bf7f-3c4a9275d6c8     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2758113..2769138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z69_RS13875 zapB 2758197..2758442 (+) 246 WP_001296623.1 septal ring assembly protein ZapB -
  E4Z69_RS13880 rraA 2758527..2759012 (-) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  E4Z69_RS13885 menA 2759105..2760031 (-) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  E4Z69_RS13890 hslU 2760098..2761429 (-) 1332 WP_001293341.1 HslU--HslV peptidase ATPase subunit -
  E4Z69_RS13895 hslV 2761439..2761969 (-) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  E4Z69_RS13900 ftsN 2762062..2763021 (-) 960 WP_000068828.1 cell division protein FtsN -
  E4Z69_RS13905 cytR 2763113..2764138 (-) 1026 WP_000644903.1 DNA-binding transcriptional regulator CytR Regulator
  E4Z69_RS13910 priA 2764294..2766492 (-) 2199 WP_001295520.1 primosomal protein N' Machinery gene
  E4Z69_RS13915 rpmE 2766695..2766907 (+) 213 WP_000710769.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37800.74 Da        Isoelectric Point: 6.3001

>NTDB_id=1004301 E4Z69_RS13905 WP_000644903.1 2763113..2764138(-) (cytR) [Escherichia coli isolate f974b26a-5e81-11e8-bf7f-3c4a9275d6c8]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKHQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=1004301 E4Z69_RS13905 WP_000644903.1 2763113..2764138(-) (cytR) [Escherichia coli isolate f974b26a-5e81-11e8-bf7f-3c4a9275d6c8]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACACCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)

Bacterial regulatory proteins, lacI family (LacI)

(11-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.881

98.24

0.628
  cytR Vibrio cholerae C6706

65.138

95.894

0.625