Detailed information NTG1004269

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E4Z69_RS07395
• Genome accession: NZ_LR536430
• Coordinates: 1428518..1429510 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate f974b26a-5e81-11e8-bf7f-3c4a9275d6c8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1423518..1434510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4Z69_RS24930	otnK	1424293..1425555 (+)	1263	Protein_1429	3-oxo-tetronate kinase	-
E4Z69_RS07380	ygbL	1425552..1426190 (+)	639	WP_001278994.1	aldolase	-
E4Z69_RS07385	ygbM	1426195..1426971 (+)	777	WP_001136936.1	HPr family phosphocarrier protein	-
E4Z69_RS07390	ygbN	1427060..1428424 (+)	1365	WP_000104466.1	GntP family transporter	-
E4Z69_RS07395	rpoS	1428518..1429510 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
E4Z69_RS07400	nlpD	1429573..1430667 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
E4Z69_RS07405	pcm	1430852..1431478 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
E4Z69_RS07410	surE	1431472..1432233 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
E4Z69_RS07415	truD	1432214..1433263 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
E4Z69_RS07420	ispF	1433260..1433739 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E4Z69_RS07425	ispD	1433739..1434449 (-)	711	WP_000246137.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1004269 E4Z69_RS07395 WP_000081550.1 1428518..1429510(-) (rpoS) [Escherichia coli isolate f974b26a-5e81-11e8-bf7f-3c4a9275d6c8]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1004269 E4Z69_RS07395 WP_000081550.1 1428518..1429510(-) (rpoS) [Escherichia coli isolate f974b26a-5e81-11e8-bf7f-3c4a9275d6c8]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715