Detailed information NTG1004186

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E4V11_RS05510
• Genome accession: NZ_LR217818
• Coordinates: 1140606..1141613 (+)
• Length: 335 a.a.
• NCBI ID: WP_066009455.1
• Uniprot ID: -
• Organism: Escherichia coli strain NCTC86
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1135606..1146613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4V11_RS05480 (SAMEA3446340_01114)	ispD	1135667..1136377 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
E4V11_RS05485 (SAMEA3446340_01115)	ispF	1136377..1136856 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E4V11_RS05490 (SAMEA3446340_01116)	truD	1136853..1137902 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
E4V11_RS05495 (SAMEA3446340_01117)	surE	1137883..1138644 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
E4V11_RS05500 (SAMEA3446340_01118)	pcm	1138638..1139264 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
E4V11_RS05505 (SAMEA3446340_01119)	nlpD	1139449..1140543 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
E4V11_RS05510 (SAMEA3446340_01120)	rpoS	1140606..1141613 (+)	1008	WP_066009455.1	RNA polymerase sigma factor RpoS	Regulator
E4V11_RS05515 (SAMEA3446340_01121)	ygbN	1141683..1143047 (-)	1365	WP_000104441.1	GntP family transporter	-
E4V11_RS05520 (SAMEA3446340_01122)	ygbM	1143136..1143912 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
E4V11_RS05525 (SAMEA3446340_01123)	ygbL	1143917..1144555 (-)	639	WP_001278994.1	aldolase	-
E4V11_RS05530 (SAMEA3446340_01124)	otnK	1144552..1145814 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38460.46 Da
• Isoelectric Point: 4.6293

>NTDB_id=1004186 E4V11_RS05510 WP_066009455.1 1140606..1141613(+) (rpoS) [Escherichia coli strain NCTC86]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRSICQKG

Nucleotide

• Length: 1008 bp

>NTDB_id=1004186 E4V11_RS05510 WP_066009455.1 1140606..1141613(+) (rpoS) [Escherichia coli strain NCTC86]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCAGCATCTGTCAGAAAGGCTAG

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	96.418	0.704