Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   E0F40_RS00115 Genome accession   NZ_LR216065
Coordinates   18492..19262 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 13492..24262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F40_RS00100 (SAMEA3714487_00019) - 15500..15937 (+) 438 WP_000076479.1 CoA-binding protein -
  E0F40_RS11900 - 15978..16148 (+) 171 WP_025168860.1 hypothetical protein -
  E0F40_RS00105 (SAMEA3714487_00020) - 16167..17177 (-) 1011 WP_000009180.1 YeiH family protein -
  E0F40_RS00110 (SAMEA3714487_00021) - 17326..18495 (+) 1170 WP_000366348.1 pyridoxal phosphate-dependent aminotransferase -
  E0F40_RS00115 (SAMEA3714487_00022) recO 18492..19262 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  E0F40_RS00120 (SAMEA3714487_00023) plsX 19259..20251 (+) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  E0F40_RS00125 (SAMEA3714487_00024) - 20257..20490 (+) 234 WP_000136449.1 acyl carrier protein -
  E0F40_RS00130 - 20527..20827 (+) 301 Protein_22 transposase family protein -
  E0F40_RS00135 (SAMEA3714487_00025) blpU 21029..21259 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  E0F40_RS12275 (SAMEA3714487_00026) - 21262..21387 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  E0F40_RS00140 (SAMEA3714487_00027) comA 21974..24127 (+) 2154 WP_000668272.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=1004046 E0F40_RS00115 WP_000616164.1 18492..19262(+) (recO) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1004046 E0F40_RS00115 WP_000616164.1 18492..19262(+) (recO) [Streptococcus pneumoniae strain GPSC18 substr. ST13 isolate 55896440-41bd-11e5-998e-3c4a9275d6c6]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992