Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAEY33_RS18260 Genome accession   NZ_CP157082
Coordinates   3757931..3759646 (-) Length   571 a.a.
NCBI ID   WP_098369847.1    Uniprot ID   -
Organism   Peribacillus simplex strain IMGN11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3752931..3764646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEY33_RS18235 (AAEY33_18230) - 3753452..3753688 (+) 237 WP_098369850.1 DUF2627 domain-containing protein -
  AAEY33_RS18240 (AAEY33_18235) - 3753732..3754466 (-) 735 WP_347939888.1 glycerophosphodiester phosphodiesterase -
  AAEY33_RS18245 (AAEY33_18240) - 3754551..3754997 (-) 447 WP_347939890.1 hypothetical protein -
  AAEY33_RS18250 (AAEY33_18245) spo0A 3755355..3756146 (-) 792 WP_063233099.1 sporulation transcription factor Spo0A -
  AAEY33_RS18255 (AAEY33_18250) spoIVB 3756477..3757769 (-) 1293 WP_076365437.1 SpoIVB peptidase -
  AAEY33_RS18260 (AAEY33_18255) recN 3757931..3759646 (-) 1716 WP_098369847.1 DNA repair protein RecN Machinery gene
  AAEY33_RS18265 (AAEY33_18260) argR 3759669..3760118 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  AAEY33_RS18270 (AAEY33_18265) - 3760446..3761273 (-) 828 WP_141993854.1 TlyA family RNA methyltransferase -
  AAEY33_RS18275 (AAEY33_18270) dxs 3761278..3763170 (-) 1893 WP_098369845.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AAEY33_RS18280 (AAEY33_18275) - 3763420..3764313 (-) 894 WP_098369844.1 polyprenyl synthetase family protein -
  AAEY33_RS18285 (AAEY33_18280) - 3764315..3764548 (-) 234 WP_034308286.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64443.42 Da        Isoelectric Point: 5.2855

>NTDB_id=1004012 AAEY33_RS18260 WP_098369847.1 3757931..3759646(-) (recN) [Peribacillus simplex strain IMGN11]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDVKHPVFAK
AEEFGIDMNDGMAILRRDISLSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKNSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=1004012 AAEY33_RS18260 WP_098369847.1 3757931..3759646(-) (recN) [Peribacillus simplex strain IMGN11]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTTTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGATTATTCCAAATTGAAGATGTAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCATCGATATGAATGATGGGATGGCGATACTTCGAAGGGATATCTCACTGAGCGGCAAAAGCGTTTG
CAGGGTAAACGGAAAGCTTGTAACGATTTCCACCTTACGTGAGATAGGACGGACGTTGATAGATATCCATGGTCAGCATG
AACATCAGGAATTAATGGACGAACGACTCCATCTTCCACTGCTCGATCAATTCGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGTTATGAAACCGCTTCTAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATCCAATTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAGCGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGAA
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTTGAGGAGGCCGTGTCTAACATCCGTGACCAATTAGACTCTTTGG
ATTATGATACAGAGCGAGTGGAATTCATTGAAAGTCGCCTTAATGAAATAAATCAATTAAAGCGTAAATACGGGCGGACC
ATCGAGGAAATCCTGGAGTATGGGGCCGCTATTGAAGAAGAAGTCGAAAAGCTGCAAAATAGGGAAACCCATATAGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATTTAATTGTCGAAGCAAAGAATCTGTCTGAACTTCGCCAGAAATTTG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAAGATTTATACATGGAAAAGACAATTTTCGAACCACATTTCCTT
CAAACGGCCTATACTTTCGATGAATTGTCAGATAGGGGCATCAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCATTAAAACCTCTTTCTAAAATCGCATCTGGTGGTGAACTGTCGAGGATCATGCTGGCATTGA
AAAGCATATTCTCCAAGCACCAAGGTATAACGTCCATTATCTTTGATGAAGTGGACACAGGTGTGAGCGGACGGGTTGCG
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACCGGATCACAAGTACTGTGCATATCCCATTTGCCACAGGTGGCAGC
TATGGCGGATACACACCTTTTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACTTCGGTAAAGCCGTTAATTGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCAGGAGTAGAGATAACGGATTTGACGAAACAACATGCCAATGAATTA
ATCCAGCTTGCCAAAAGGCTGAAAATTACATCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.615

Multiple sequence alignment