Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AAEY33_RS06445 Genome accession   NZ_CP157082
Coordinates   1320470..1322287 (+) Length   605 a.a.
NCBI ID   WP_347941628.1    Uniprot ID   -
Organism   Peribacillus simplex strain IMGN11     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1315470..1327287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEY33_RS06425 (AAEY33_06425) spxA 1315789..1316184 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  AAEY33_RS06430 (AAEY33_06430) mecA 1316679..1317347 (+) 669 WP_098371288.1 adaptor protein MecA -
  AAEY33_RS06435 (AAEY33_06435) cls 1317467..1318975 (+) 1509 WP_347941626.1 cardiolipin synthase -
  AAEY33_RS06440 (AAEY33_06440) - 1319069..1320277 (+) 1209 WP_347941627.1 competence protein CoiA family protein -
  AAEY33_RS06445 (AAEY33_06445) pepF 1320470..1322287 (+) 1818 WP_347941628.1 oligoendopeptidase F Regulator
  AAEY33_RS06450 (AAEY33_06450) - 1323226..1324092 (-) 867 WP_260399660.1 ClpXP adapter SpxH family protein -
  AAEY33_RS06455 (AAEY33_06455) - 1324116..1324520 (-) 405 WP_053534150.1 globin -
  AAEY33_RS06460 (AAEY33_06460) - 1324755..1325414 (-) 660 WP_347941630.1 lytic transglycosylase domain-containing protein -
  AAEY33_RS06465 (AAEY33_06465) - 1325446..1326024 (-) 579 WP_141993153.1 CYTH domain-containing protein -
  AAEY33_RS06470 (AAEY33_06470) - 1326340..1326960 (+) 621 WP_034314484.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69845.27 Da        Isoelectric Point: 4.7108

>NTDB_id=1004004 AAEY33_RS06445 WP_347941628.1 1320470..1322287(+) (pepF) [Peribacillus simplex strain IMGN11]
MAQETKANTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEGHKGTLGESAEKLFAALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSFMVPELLSIDENKVEGFLEEKEDLKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYISFLESEDRRVREEAFKGVYRKYGEFRNTFAST
LSGEVKNHNFNATVRKYESARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLQLDELHMYDLFTPLVKEVKM
EVTYDDAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNENLLNDYLLNSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYELNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1004004 AAEY33_RS06445 WP_347941628.1 1320470..1322287(+) (pepF) [Peribacillus simplex strain IMGN11]
ATGGCACAGGAAACAAAAGCGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACTTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTAAAAGAAGATCTCAAGAAAGCGGAGGGACATAAAGGGA
CGTTGGGAGAAAGCGCAGAAAAATTATTTGCGGCCCTTCAACTCCAAGATGAGGTATTCGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGTAATGATCAAGATACAACCAATCCTTTTTATCAAGGGATGGAGGATCGGGCAAAAGCTTTATA
CGCCCAGGCAGCGGCTGCGTTTTCATTTATGGTTCCTGAACTATTGAGTATTGATGAAAACAAAGTGGAAGGGTTTTTGG
AAGAAAAAGAAGATCTGAAATTATACAAACATTCTTTAGAGGAAATTAATCTTCAGAGACCCCATATTTTATCTGCAGAG
CAGGAAGAATTATTGGCGCAAGCATCAGAAGTACTTGATGCATCGGGCAATACTTTCGGAATGCTTAACAATGCCGATTT
GAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTGGAAATTACTCACGGAAGGTATATCAGTTTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGGAAGTATGGAGAGTTCCGTAATACATTTGCTTCAACC
CTGTCAGGTGAGGTGAAAAACCACAACTTCAATGCCACGGTTCGAAAATATGAATCAGCACGCCAAGCGGCGTTAAGTAA
TAATAACATTCCGGAGACCGTATACGATAATCTAGTTAAAACGGTCAATGACAACTTGCCATTACTGCACCGTTATCTTG
ATTTGCGTAAAAAAGTACTGCAATTAGATGAACTTCATATGTACGATCTATTCACTCCTCTTGTTAAAGAAGTGAAGATG
GAAGTGACATATGACGATGCCAAAGATTATGTCCTTAAAGGTCTTGCTCCGCTTGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGATTTGAAAACCGTTGGGTCGATGTGCATGAAAACAAAGGGAAACGAAGCGGTGCCTATTCTTCTGGTACATATG
GGACGAATCCTTATATTTTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAATTTGGGCATTCG
GTTCATAGCTACTATACACGTAAATATCAGCCATATCCATACGGGAATTATTCCATATTTGTAGCGGAAGTTGCATCAAC
TTGTAATGAAAACTTGTTGAACGATTATTTACTGAATTCAATCGAAGATGAAAAGAAACGCATCTATTTATTGAATCATT
ACCTGGAAGGTTTCCGCGGCACATTGTTCCGGCAAACGATGTTTGCAGAGTTTGAACATACGATTCATTTAAAAGCTCAA
AATGGGGAAGCGTTGACAGCGGATATGCTTACTAAGGAATATTATGAGCTGAACAAGAAATACTTTGGAGAGAACGTGAC
CATTGATGAAGAAATCGGTTTGGAATGGGCGCGCATTCCACACTTCTACTATAATTACTATGTTTATCAATATGCAACTG
GAATCAGTGCAGCAACAGCATTGAGCAAGCAAATCCTAGAAGAAGGAGAGCCTGCTGTCAAAAGGTATCTGGAGTTCTTG
AAGTCAGGAAGTTCCGATTATCCGATTGAAGTGCTCAAAAAGGCTGGCGTCGATATGACTAAAGCCGAACCTGTACAAGA
AGCCATGAATGTATTCGAAGAAAAATTAAATGAGTTGGAAGAGCTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.168

98.182

0.493

Multiple sequence alignment