Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QUE29_RS05105 Genome accession   NZ_AP027258
Coordinates   1065184..1065813 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain JNE151685     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1060184..1070813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE29_RS05085 (JNE151685_09610) ycbZ 1060573..1062333 (-) 1761 WP_001585536.1 Lon protease family protein -
  QUE29_RS05090 (JNE151685_09620) matP 1062519..1062971 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QUE29_RS05095 (JNE151685_09630) ompA 1063047..1064099 (-) 1053 WP_001307702.1 porin OmpA -
  QUE29_RS05100 (JNE151685_09650) sulA 1064456..1064965 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QUE29_RS05105 (JNE151685_09660) sxy/tfoX 1065184..1065813 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QUE29_RS05110 (JNE151685_09670) yccS 1065776..1067938 (-) 2163 WP_000875046.1 YccS family putative transporter -
  QUE29_RS05115 (JNE151685_09680) yccF 1067948..1068394 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QUE29_RS05120 (JNE151685_09690) helD 1068517..1070571 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=100399 QUE29_RS05105 WP_000839153.1 1065184..1065813(+) (sxy/tfoX) [Escherichia coli strain JNE151685]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=100399 QUE29_RS05105 WP_000839153.1 1065184..1065813(+) (sxy/tfoX) [Escherichia coli strain JNE151685]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCGCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment