Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABG777_RS01545 Genome accession   NZ_CP157073
Coordinates   305593..307383 (+) Length   596 a.a.
NCBI ID   WP_189428876.1    Uniprot ID   -
Organism   Leuconostoc lactis strain APC3969     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 300593..312383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG777_RS01525 - 300694..302142 (+) 1449 WP_189428874.1 ABC transporter substrate-binding protein/permease -
  ABG777_RS01530 - 302139..302891 (+) 753 WP_010004224.1 amino acid ABC transporter ATP-binding protein -
  ABG777_RS01535 - 302995..304434 (+) 1440 WP_420063054.1 ABC transporter substrate-binding protein/permease -
  ABG777_RS01540 - 304484..305512 (+) 1029 WP_189428875.1 competence protein CoiA -
  ABG777_RS01545 pepF 305593..307383 (+) 1791 WP_189428876.1 oligoendopeptidase F Regulator
  ABG777_RS01550 - 307456..307854 (+) 399 WP_010006087.1 cytidine deaminase -
  ABG777_RS01555 - 307902..308825 (+) 924 WP_146976313.1 phosphoglycerate dehydrogenase -
  ABG777_RS01560 - 308859..309833 (-) 975 WP_189428877.1 LacI family DNA-binding transcriptional regulator -
  ABG777_RS01565 - 310014..311030 (+) 1017 WP_189428878.1 zinc-dependent alcohol dehydrogenase family protein -
  ABG777_RS01570 - 311097..311480 (+) 384 WP_189428879.1 VOC family protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 67363.89 Da        Isoelectric Point: 4.3611

>NTDB_id=1003976 ABG777_RS01545 WP_189428876.1 305593..307383(+) (pepF) [Leuconostoc lactis strain APC3969]
MAQLQRDEVPEELTWDLTSIFATDDDWETAYDALHQGAQALKQFVGHVGDSAQTLQAALEADLDLERQLEKVYVYAHQIY
DQDTTNQKYAAFNSRAQALWSEVSEATAYFQPEVLNIPEETLANYLKTAGLQPYQHLFDQILAQKPYTLPAEQEALLAGA
GDIFNASENTFGALDNSDMTFGDVHTETGEVVPLTNGLYSLLLESKSRELRQEAFETLYDSYIALQNTFASTLSSHVKGH
NYLAKVRHYRSAREAAILPHSLPTSVFETLRETVDANLPLLHRFVSLRKQVLGVDDVHSYDLYVPLVDEIDFDVTYDKAK
DIVLAALAPLGPDYIAVVKKAFDERWIDVVENKGKRTGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSVHSYLTRQ
AQPYHYGDYPIFLAEIASTTNESLLTDYLLKTNDDPKFQAYVLNQYLDGFKGTVFRQTQFAEFEDWIHEQSAAGVALTAD
AMSTYYAALNQKYYGPDLFPDEEIAYEWARIPHFYYNYYVYQYATGEAAATTLADRILNQNGAEAYKDYLKAGASDYPLA
VIGQAGVDMTQADYLKEAFGVFEKRLDQLTDLLVHK

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=1003976 ABG777_RS01545 WP_189428876.1 305593..307383(+) (pepF) [Leuconostoc lactis strain APC3969]
ATGGCACAACTACAACGCGATGAAGTACCTGAAGAGTTAACTTGGGATTTGACCTCCATTTTTGCAACTGATGATGATTG
GGAAACAGCCTATGATGCGCTGCATCAAGGCGCGCAGGCGCTGAAGCAATTTGTGGGGCATGTTGGTGATTCAGCCCAAA
CGTTGCAAGCAGCACTGGAAGCCGATCTTGATTTGGAACGTCAATTAGAAAAAGTCTATGTCTATGCGCACCAAATTTAT
GATCAAGATACGACGAATCAAAAATATGCCGCTTTTAATAGCCGTGCGCAAGCACTTTGGTCTGAAGTCAGTGAAGCAAC
AGCTTACTTCCAACCAGAAGTGTTGAATATTCCAGAAGAAACGTTGGCGAACTATTTGAAGACGGCAGGGTTGCAACCTT
ACCAACATTTATTTGATCAAATTCTGGCGCAAAAGCCTTACACTTTGCCAGCAGAACAGGAAGCACTGCTGGCTGGAGCT
GGGGATATTTTTAACGCTTCCGAGAACACTTTTGGTGCGTTAGATAACTCAGACATGACGTTTGGGGATGTCCATACTGA
AACGGGTGAAGTGGTGCCATTGACAAATGGCCTTTACAGTCTGTTGTTGGAATCTAAGTCACGTGAATTACGTCAAGAAG
CGTTTGAAACCTTGTACGATAGTTACATTGCCTTGCAAAACACTTTCGCGTCAACGTTATCGTCACATGTCAAAGGCCAT
AATTATTTAGCGAAAGTGCGTCACTATCGCTCAGCGCGGGAAGCAGCCATTTTACCACACAGCCTACCAACATCAGTATT
TGAAACGTTGCGTGAAACGGTTGATGCCAATTTGCCATTGTTGCATCGCTTTGTATCACTCCGTAAGCAAGTTTTGGGTG
TTGACGATGTGCACTCATACGACCTCTACGTACCGTTGGTCGATGAGATTGATTTTGATGTCACTTATGACAAAGCCAAA
GACATTGTGTTGGCCGCTTTGGCACCATTAGGACCAGACTATATTGCCGTGGTTAAAAAGGCCTTTGACGAACGCTGGAT
TGATGTGGTGGAAAATAAGGGCAAGCGGACTGGTGCGTATTCAAGTGGCACCTATGACACGAACCCCTTTATTTTGTTAA
ATTGGCAAAATAACTTAAATAACGTCTACACTTTGGCCCATGAAATGGGACACTCGGTGCATTCTTATTTGACTCGCCAA
GCACAACCTTATCATTATGGTGATTACCCAATTTTCCTAGCTGAAATTGCGTCAACAACCAATGAAAGCCTACTGACGGA
TTATTTGTTAAAGACAAATGATGATCCAAAATTCCAAGCTTATGTGTTGAATCAATATCTTGATGGCTTTAAGGGCACGG
TATTCCGACAGACCCAATTTGCGGAATTTGAAGATTGGATTCATGAACAAAGTGCCGCTGGAGTGGCGTTAACAGCTGAC
GCGATGAGTACGTACTATGCGGCATTGAACCAGAAGTACTATGGGCCAGATCTCTTCCCGGATGAAGAAATCGCGTATGA
ATGGGCCCGTATTCCACATTTCTACTACAATTATTATGTCTATCAGTATGCCACTGGTGAAGCCGCAGCGACGACTTTAG
CTGATCGTATTTTGAACCAGAATGGAGCAGAAGCGTATAAAGACTACTTAAAGGCCGGTGCCTCAGACTATCCATTAGCC
GTTATCGGCCAAGCAGGGGTTGATATGACGCAAGCGGATTATTTGAAGGAAGCCTTTGGCGTGTTTGAAAAGCGTCTCGA
TCAGTTGACAGATTTGTTAGTTCACAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.638

99.161

0.532

Multiple sequence alignment