Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   E0F31_RS00170 Genome accession   NZ_LR216064
Coordinates   21943..22713 (+) Length   256 a.a.
NCBI ID   WP_000616122.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 16943..27713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F31_RS00150 (SAMEA3714520_00029) - 18863..19300 (+) 438 WP_000076479.1 CoA-binding protein -
  E0F31_RS11585 (SAMEA3714520_00030) - 19341..19589 (+) 249 WP_000692961.1 hypothetical protein -
  E0F31_RS00160 (SAMEA3714520_00031) - 19618..20628 (-) 1011 WP_000009170.1 YeiH family protein -
  E0F31_RS00165 (SAMEA3714520_00032) - 20777..21946 (+) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  E0F31_RS00170 (SAMEA3714520_00033) recO 21943..22713 (+) 771 WP_000616122.1 DNA repair protein RecO Machinery gene
  E0F31_RS00175 (SAMEA3714520_00034) plsX 22710..23702 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  E0F31_RS00180 (SAMEA3714520_00035) - 23708..23941 (+) 234 WP_000136449.1 acyl carrier protein -
  E0F31_RS00185 - 23978..24278 (+) 301 Protein_31 transposase family protein -
  E0F31_RS00190 (SAMEA3714520_00036) blpU 24481..24711 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  E0F31_RS11990 (SAMEA3714520_00037) - 24714..24839 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  E0F31_RS00195 (SAMEA3714520_00038) comA 25426..27579 (+) 2154 WP_000668294.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29801.38 Da        Isoelectric Point: 5.8959

>NTDB_id=1003930 E0F31_RS00170 WP_000616122.1 21943..22713(+) (recO) [Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6]
MIQSITSQGLVLYNRNFREDDKLIKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1003930 E0F31_RS00170 WP_000616122.1 21943..22713(+) (recO) [Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCATCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTATTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.828

100

0.988